View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14795_low_5 (Length: 353)
Name: NF14795_low_5
Description: NF14795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14795_low_5 |
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| [»] scaffold0287 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: scaffold0287 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 17 - 353
Target Start/End: Original strand, 14147 - 14483
Alignment:
| Q |
17 |
atctccatcaacttgacacttcaaatcttcatttacaattttggaatctctcaaaaatctatggtcctcttttctctcttcaaattggtttcaagaaagc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14147 |
atctccatcaacttgacacttcaaatcttcatttacaattttggaatctctcaaaaatctatggtcctcttttctctcttcaaattggtttcaagaaagc |
14246 |
T |
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| Q |
117 |
aattgttgtttgctcacctaaactagctcaagaaattctcaaagatcatgatcatgatgtatctagtagacctccatcgtatggtacacaaatattgtca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
14247 |
cattgttgtttgctcacctaaactagctcaagaaattctcaaagatcatgaccatgatgtatctagtagacctccatcatatggtacacaaatattgtca |
14346 |
T |
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| Q |
217 |
tacaatggcatggatatgatattttcaccatacaatgatcattggagagagataagaaaaatttgtattgtccatttctttagctccnnnnnnntttcta |
316 |
Q |
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| T |
14347 |
tacaatggcatggatatgatattttcaccatacaatgatcattggagagagataagaaaaatttgtattgtccatttctttagctccaaaaaaatttcta |
14446 |
T |
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| Q |
317 |
gcttttctcatgtgagaaaatctgaggtcaaacaaat |
353 |
Q |
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| T |
14447 |
gcttttctcatgtgagaaaatctgaggtcaagcaaat |
14483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 17 - 353
Target Start/End: Complemental strand, 3631938 - 3631602
Alignment:
| Q |
17 |
atctccatcaacttgacacttcaaatcttcatttacaattttggaatctctcaaaaatctatggtcctcttttctctcttcaaattggtttcaagaaagc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3631938 |
atctccatcaacttgacacttcaaatcttcatttacaattttggaatctctcaaaaatctatggtcctcttttctctcttcaaattggtttcaagaaagc |
3631839 |
T |
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| Q |
117 |
aattgttgtttgctcacctaaactagctcaagaaattctcaaagatcatgatcatgatgtatctagtagacctccatcgtatggtacacaaatattgtca |
216 |
Q |
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| T |
3631838 |
cattgttgtttgctcacctaaactagctcaagaaattctcaaagatcatgaccatgatgtatctagtagacctccatcatatggtacacaaatattgtca |
3631739 |
T |
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| Q |
217 |
tacaatggcatggatatgatattttcaccatacaatgatcattggagagagataagaaaaatttgtattgtccatttctttagctccnnnnnnntttcta |
316 |
Q |
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| T |
3631738 |
tacaatggcatggatatgatattttcaccatacaatgatcattggagagagataagaaaaatttgtattgtccatttctttagctccaaaaaaatttcta |
3631639 |
T |
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| Q |
317 |
gcttttctcatgtgagaaaatctgaggtcaaacaaat |
353 |
Q |
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| T |
3631638 |
gcttttctcatgtgagaaaatctgaggtcaagcaaat |
3631602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 17 - 347
Target Start/End: Complemental strand, 3621541 - 3621211
Alignment:
| Q |
17 |
atctccatcaacttgacacttcaaatcttcatttacaattttggaatctctcaaaaatctatggtcctcttttctctcttcaaattggtttcaagaaagc |
116 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3621541 |
atctccatcaacttgacacttcaaatctccatttacaattttggaatctctcaaaaatctatggtcctcttttctctcttcaaattggtttcaagaaagc |
3621442 |
T |
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| Q |
117 |
aattgttgtttgctcacctaaactagctcaagaaattctcaaagatcatgatcatgatgtatctagtagacctccatcgtatggtacacaaatattgtca |
216 |
Q |
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| T |
3621441 |
aattgttgtttgctcatctaaactagctcaagaaattctcaaagatcatgatcatgatgtatctagtagacctccatcacatggtccaaaaacattgtca |
3621342 |
T |
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| Q |
217 |
tacaatggcatggatatgatattttcaccatacaatgatcattggagagagataagaaaaatttgtattgtccatttctttagctccnnnnnnntttcta |
316 |
Q |
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|| ||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
3621341 |
tataatggtatagatatgatattttcaccatacaatgattgttggagagagataagaaaaatttgtgttgtccatttctttagctccaaaaaaatttcta |
3621242 |
T |
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| Q |
317 |
gcttttctcatgtgagaaaatctgaggtcaa |
347 |
Q |
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| T |
3621241 |
gctttgctcatgtgagaaaatctgaggtcaa |
3621211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 9027370 - 9027422
Alignment:
| Q |
235 |
atattttcaccatacaatgatcattggagagagataagaaaaatttgtattgt |
287 |
Q |
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| T |
9027370 |
atattttcacaatacactgatttttggagagaaataagaaaaatttgtgttgt |
9027422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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