View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14795_low_6 (Length: 321)
Name: NF14795_low_6
Description: NF14795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14795_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 14700150 - 14700454
Alignment:
| Q |
1 |
aaagtggggaggatccnnnnnnncattggtcaatttgttttgctgtctttcatgaaagacaaatcctaataagatgcttctttaccttctcctacgtgcc |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14700150 |
aaagtggggaggatcctttttttcattggtcaatttgttttgctgtctttcatgaaagacaaatcctaataagatgcttctttaccttctcctacgtgcc |
14700249 |
T |
|
| Q |
101 |
cttgtggaaacttacacctctttctattatagaaaaaatttctgcactttcattttcttctaggacagagagaaggcttggagagttataagtgtcaata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
14700250 |
cttgtggaaacttacacctctttctattatagaaaaaatttctgcactttcattttcttctaggacagagaaaaggcttggagagttataagtgtcaata |
14700349 |
T |
|
| Q |
201 |
aaagagaaaacaacacatgaaacaaacaagtactttaactcattctgcaaagtaccatagaactttgagccactgcaaccaatggagaagtttgccagtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14700350 |
aaagagaaaacaacacatgaaacaaacaagtactttaactcattctgcgaagtaccatagaactttgagccactgcaaccaatggagaagtttgccagtt |
14700449 |
T |
|
| Q |
301 |
attat |
305 |
Q |
| |
|
||||| |
|
|
| T |
14700450 |
attat |
14700454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University