View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14795_low_8 (Length: 294)
Name: NF14795_low_8
Description: NF14795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14795_low_8 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 47501394 - 47501687
Alignment:
| Q |
1 |
atggtatttttcttagggaaaccaaatgtagcattagatgaaaagtttttgttggggaaagcatttttggggaattttcctaatgctacaatggtatttt |
100 |
Q |
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| T |
47501394 |
atggtatttttcttagggaaaccaaatgtagcattagatgaaaagtttttgttggggaaagcatttttggggaattttcctaatgctacaatggtatttt |
47501493 |
T |
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| Q |
101 |
atcaaggtgttttcgctggtcttactttgattttgatagctggtgctttacttgggagaatgaacattcgtgcatggatgttgtttgtgccactttgggt |
200 |
Q |
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| T |
47501494 |
atcaaggtgttttcgctggtcttactttgattttgatagctggtgctttacttgggagaatgaacattcgtgcatggatgttgtttgtgccactttgggt |
47501593 |
T |
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| Q |
201 |
tacattctcgtacactgttgttgcctttagtatttggtgtcctgatggttggttggctaaacgtggggttattgattttgctgggggatatgtt |
294 |
Q |
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| T |
47501594 |
tacattctcgtacactgttgttgcctttagtatttggtgtcctgatggttggttggctaaacgtggggttattgattttgctgggggatatgtt |
47501687 |
T |
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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 237
Target Start/End: Complemental strand, 13350111 - 13349950
Alignment:
| Q |
76 |
tttcctaatgctacaatggtattttatcaaggtgttttcgctggtcttactttgattttgatagctggtgctttacttgggagaatgaacattcgtgcat |
175 |
Q |
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| T |
13350111 |
tttccaaatgctactatgatttattttcaatgtgtttttgctgctattactttgattttgatagctggtgctgtgttggggagaatgaacttctatgctt |
13350012 |
T |
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| Q |
176 |
ggatgttgtttgtgccactttgggttacattctcgtacactgttgttgcctttagtatttgg |
237 |
Q |
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| T |
13350011 |
ggatgatgtttgtgcctttatggctcactttctcttacacttttactgcttttagtatttgg |
13349950 |
T |
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