View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14796_low_2 (Length: 488)
Name: NF14796_low_2
Description: NF14796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14796_low_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 14 - 488
Target Start/End: Original strand, 42149856 - 42150330
Alignment:
| Q |
14 |
caaaatcagccagtttggcgagaaaagtcaggttatgctgaagcttggcttgatatctgtatcatgttaattgaatatgtcataaagaagccagtgtgca |
113 |
Q |
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| T |
42149856 |
caaaatcagccagtttggcgagaaaagtcaggttatgctgaagcttggcttgatatctgtatcatgttaattgaatatgtcataaagaagccagtgtgca |
42149955 |
T |
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| Q |
114 |
agcttgattattattagcagagatacaaattatgataaagccattagccatagataacaattaagaaggcaaccacagcatatagtaaataaatgacact |
213 |
Q |
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| T |
42149956 |
agcttgattattattagcagagatacaaattatgataaagccattagccatagataacaattaagaaggcaaccacagcatatagtaaataaatgacact |
42150055 |
T |
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| Q |
214 |
tgcaacaaacaaactcaaactaaataacaaatacaaccaaggtagtgtatggcatatgaaaagaatggaacttcatatctttgcttccgttctatgcaat |
313 |
Q |
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| T |
42150056 |
tgcaacaaacaaactcaaactaaataacaaatacaaccaaggtagtgtatggcatatgaaaagaatggaacttgatatctttgcttccgttctatgcaat |
42150155 |
T |
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| Q |
314 |
gaagtcaaaatgtataagcactccgtttcttcaagtcatgttttatttttaacacgtatcgaacattttctgttctgttctaacttgtctgccaaacatt |
413 |
Q |
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| T |
42150156 |
gaagtcaaaatgtataagcactccgtttcttcaagtcatgttttatttttaacacgtatcgaacattttctgttctgttctaacttgtctgccaaacatt |
42150255 |
T |
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| Q |
414 |
agcttatatttttcaaccggaaagacaaataatttgggacaacataaatactattctgttttgtgaaatggcgtc |
488 |
Q |
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| T |
42150256 |
agcttatatttttcaaccggaaagacgaataatttgggacaacataaatactattctgttttgtgaaatggcgtc |
42150330 |
T |
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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 30835663 - 30835629
Alignment:
| Q |
35 |
gaaaagtcaggttatgctgaagcttggcttgatat |
69 |
Q |
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| T |
30835663 |
gaaaagtcaggttatgctgaagcttggcttgatat |
30835629 |
T |
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