View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14796_low_3 (Length: 471)
Name: NF14796_low_3
Description: NF14796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14796_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 170 - 455
Target Start/End: Complemental strand, 11953736 - 11953451
Alignment:
| Q |
170 |
atctatttaagacttcttagtggatagagcctccaccaaactaaaacctccagaatttactgctgccattgtaaggccacaaaagtgttaacatcaatgt |
269 |
Q |
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| T |
11953736 |
atctatttaagacttcttagtggatagagcctccaccaaactaaaacctccagaatttactgctgccattgaaaggccacaaaagtgttaaaatcaatgt |
11953637 |
T |
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| Q |
270 |
caaactattattataatctatgaaaagattataaataatatttatatactctctaccatatagacacgaacagaacaagcatataagaccagcgtaaata |
369 |
Q |
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| T |
11953636 |
caaactattattatcatctatgaaaagattataaataatatttatatactctctaccatatagacacgaacagaacaagcatataagaccaacgtaaata |
11953537 |
T |
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| Q |
370 |
ataatttgaagccgagaaacaaaatacaagataacaagaattagaatagtatttggttgctcacttattactctgacttgaaccac |
455 |
Q |
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| T |
11953536 |
ataatctgaagccaagaaacaaaatacaagataacaagaattagaatagtatttggttgctcacttattactctgacttgaaccac |
11953451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 11953888 - 11953781
Alignment:
| Q |
18 |
attttggccatggaaagtcgtgcaagcacaacctcgaatagatcttcagggaacttttcccaaatttctggtttcataacttcagtcatacatgacactc |
117 |
Q |
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| T |
11953888 |
attttggccatgggaagtcgtgcaagcacaacctcaaatagatcttcagggaacttttcccaaatttctggtttcataacttcagtcatacatgacactc |
11953789 |
T |
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| Q |
118 |
tagacttg |
125 |
Q |
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| T |
11953788 |
tagacttg |
11953781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 27 - 105
Target Start/End: Complemental strand, 11980068 - 11979990
Alignment:
| Q |
27 |
atggaaagtcgtgcaagcacaacctcgaatagatcttcagggaacttttcccaaatttctggtttcataacttcagtca |
105 |
Q |
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| T |
11980068 |
atgggaagtcgtgcaagaacattctcaaatagatcttcaggaaatttttcccaaatttgtggtttcataacttcagtca |
11979990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 34751464 - 34751416
Alignment:
| Q |
54 |
aatagatcttcagggaacttttcccaaatttctggtttcataacttcag |
102 |
Q |
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| T |
34751464 |
aatagatcttcaggaaatttttcccaaatttggggtttcataatttcag |
34751416 |
T |
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