View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14796_low_5 (Length: 450)
Name: NF14796_low_5
Description: NF14796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14796_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 18 - 447
Target Start/End: Original strand, 1235653 - 1236079
Alignment:
| Q |
18 |
cagagtcaagtccagctaagagttcactgaattaaacactttctgttctttaaaatgtttccctttttcttcattttggtcttcaaatgtattttagttg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1235653 |
cagagtcaagtccagctaagagttcactgaattaaacactttctgttctttaaaatgtttccctttttcttcattttggtcttcaaatgtattttagttg |
1235752 |
T |
|
| Q |
118 |
gagaatcaaaatagggtccgctggtagcatttttgggcaatctagaacgatgtcacgctcattttggaccaacatgtaggagtgtgatatataataataa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1235753 |
gagaatcaaaatagggtccgctggtagcatttttggccaatctagaacgatgtcacgctcattttggaccaacatgtaggagtgtgatatataa---taa |
1235849 |
T |
|
| Q |
218 |
tttgatactccatattttaggcattacatgcaacttcttttacccctcctcatttttcttgactttgttgttcatgttcatctgtttgtgaatcttcatt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1235850 |
tttgatactccatattttaggcattacatgcaacttcttttacccctcctcatttttcttgactttgttgttcatgttcatctgtttgtgaatcttcatt |
1235949 |
T |
|
| Q |
318 |
atccttaaccatctgattattgttgttgaggttgcttttatcttcttctatagacctcacaactatttcaacttggtcaaattcatgtgggttttttgat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1235950 |
atccttaaccatctgattattgttgttgaggttgcttttatctttttctatagacctcacaactatttcaactgggtcaaattcatgtgggttttttgat |
1236049 |
T |
|
| Q |
418 |
ggcactaattgattctttttcttcatctct |
447 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
1236050 |
ggcactaattgattctttttcttcatctct |
1236079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 447
Target Start/End: Original strand, 915996 - 916071
Alignment:
| Q |
372 |
cctcacaactatttcaacttggtcaaattcatgtgggttttttgatggcactaattgattctttttcttcatctct |
447 |
Q |
| |
|
|||||||||||||||||| ||||||||||| | | ||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
915996 |
cctcacaactatttcaacagtgtcaaattcattggagctttgtgatggcactaattgattatttttcttcatctct |
916071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University