View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14796_low_6 (Length: 356)
Name: NF14796_low_6
Description: NF14796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14796_low_6 |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 26721773 - 26722128
Alignment:
| Q |
1 |
ctttcaaggaatgttagaggcttatcactctcttttgaagagcatgttcccaaagtgattgggaacatcaaactcacnnnnnnnnnnctcattctcttat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||| | |
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| T |
26721773 |
ctttcaaggaatgttagaggcttatcactctcttttgaagagcatgttcccaaagtgattgggaaaaacaaactcacttttttttatctcattctcttct |
26721872 |
T |
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| Q |
101 |
tacttttaatttcattttattctgtaataatgataatgagattgtttctatctacactttataggttctgcaaatatggttcaaagaagaaaaaccatga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
26721873 |
tacttttaatttcattttattctgtaataatgataacgagattgtttctatctacactttataggttctacaaatatggttcaaagaagaaaaaccatga |
26721972 |
T |
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| Q |
201 |
gccttggattatgatttgaggttgtaatttgagaaaatggtttaagactctatttgttgtgtaatttccatcaaagctctcagtactcaaaaacaaaact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||| |
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| T |
26721973 |
gccttggattatgatttgaggttgtaatttgagaaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcactactcaaagacaaaact |
26722072 |
T |
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| Q |
301 |
ccaattctcataatcacaaaaccaaaaggcgtcattccttctcaaattaatttttt |
356 |
Q |
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||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
26722073 |
ccaattctcataatcacgaaaccaaaaggcatcattccttctcaaattaatttttt |
26722128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 45117136 - 45116794
Alignment:
| Q |
1 |
ctttcaaggaatgttagaggcttatcactctcttttgaagagcatgttcccaaagtgattgggaacatcaaactcacnnnnnnnnnnctcattctcttat |
100 |
Q |
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|||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||| |||| ||||||||||| | |
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| T |
45117136 |
ctttcaaggaatgtaagaggctcatcactctctttttaagagcatgctcccaaagtgattgggaacatcaaattcacttttttttatctcattctcttct |
45117037 |
T |
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| Q |
101 |
tacttttaatttcattttattctgtaataatgataatgagattgtttctatctacactttataggttctgcaaatatggttcaaagaagaaaaaccatga |
200 |
Q |
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| T |
45117036 |
tacttttaatttcattttattctgtaataatgataatgagattgtttctatctacactttataggttctgcaaatatggttcaaagaagaaaaaccatga |
45116937 |
T |
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| Q |
201 |
gccttggattatgatttgaggttgtaatttgagaaaatggtttaagactctatttgttgtgtaatttccatcaaagctctcagtactcaaaaacaaaact |
300 |
Q |
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| T |
45116936 |
gccttggattatgatt-------------tgagaaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcactactcaaagacaaaact |
45116850 |
T |
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| Q |
301 |
ccaattctcataatcacaaaaccaaaaggcgtcattccttctcaaattaatttttt |
356 |
Q |
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||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
45116849 |
ccaattctcataatcacgaaaccaaaaggcatcattccttctcaaattaatttttt |
45116794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 2987241 - 2987584
Alignment:
| Q |
1 |
ctttcaaggaatgttagaggcttatcactctcttttgaagagcatgttcccaaagtgattgggaacatcaaactcacnnnnnnnnnn-ctcattctctta |
99 |
Q |
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|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
2987241 |
ctttcaaggaatgtaagaggcttatcactctctttttaagagcatgttcccaaagtgattgggaacatcaaattcactttttttttatctcattctcttc |
2987340 |
T |
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| Q |
100 |
ttacttttaatttcattttattctgtaataatgataatgagattgtttctatctacactttataggttctgcaaatatggttcaaagaagaaaaaccatg |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2987341 |
ttacttttaatttcattttattctgtaataatgataatgagattgtttctatctatactttataggttctgcaaatatggttcaaagaagaaaaaccatg |
2987440 |
T |
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| Q |
200 |
agccttggattatgatttgaggttgtaatttgagaaaatggtttaagactctatttgttgtgtaatttccatcaaagctctcagtactcaaaaacaaaac |
299 |
Q |
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|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| | ||||| |||||||| ||||||| |
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| T |
2987441 |
agccttggattatg-------------atttgagaaaatggtttaatactctatttgttgtgtaatttccatcaatgttctcactactcaaagacaaaac |
2987527 |
T |
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| Q |
300 |
tccaattctcataatcacaaaaccaaaaggcgtcattccttctcaaattaatttttt |
356 |
Q |
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|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
2987528 |
tccaattctcataatcacgaaaccaaaaggcatcattccttctcaaattaatttttt |
2987584 |
T |
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