View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14797_high_3 (Length: 314)

Name: NF14797_high_3
Description: NF14797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14797_high_3
NF14797_high_3
[»] chr5 (9 HSPs)
chr5 (17-297)||(5504598-5504874)
chr5 (30-155)||(33144137-33144262)
chr5 (30-129)||(30491748-30491847)
chr5 (46-157)||(6702368-6702479)
chr5 (48-156)||(40008711-40008819)
chr5 (38-131)||(4845325-4845418)
chr5 (82-155)||(4846932-4847006)
chr5 (47-157)||(1975272-1975382)
chr5 (82-131)||(30489747-30489796)
[»] chr3 (14 HSPs)
chr3 (21-155)||(15041950-15042084)
chr3 (21-155)||(34086784-34086917)
chr3 (30-155)||(19866733-19866858)
chr3 (45-147)||(7666930-7667032)
chr3 (46-137)||(39688721-39688812)
chr3 (30-156)||(53827614-53827740)
chr3 (30-137)||(3860792-3860898)
chr3 (64-128)||(6162669-6162733)
chr3 (76-129)||(19872140-19872193)
chr3 (55-155)||(42381615-42381715)
chr3 (82-157)||(16967988-16968063)
chr3 (47-128)||(44836448-44836529)
chr3 (64-128)||(4969902-4969966)
chr3 (55-131)||(16931470-16931546)
[»] chr4 (14 HSPs)
chr4 (21-156)||(24972389-24972524)
chr4 (41-155)||(36498906-36499020)
chr4 (30-156)||(12586183-12586310)
chr4 (21-155)||(55523725-55523859)
chr4 (42-155)||(40450931-40451044)
chr4 (21-147)||(636528-636654)
chr4 (47-126)||(36217899-36217978)
chr4 (41-147)||(40923384-40923490)
chr4 (30-155)||(28798098-28798223)
chr4 (80-127)||(38676967-38677014)
chr4 (47-157)||(33164475-33164585)
chr4 (53-138)||(42099502-42099587)
chr4 (64-156)||(46817419-46817511)
chr4 (47-95)||(53267771-53267819)
[»] chr2 (10 HSPs)
chr2 (21-157)||(11573631-11573767)
chr2 (51-139)||(24928674-24928762)
chr2 (47-129)||(37892978-37893060)
chr2 (30-155)||(25678272-25678401)
chr2 (47-128)||(12969234-12969314)
chr2 (47-140)||(42119172-42119265)
chr2 (47-86)||(939628-939667)
chr2 (77-156)||(18394970-18395049)
chr2 (108-165)||(2154252-2154309)
chr2 (52-104)||(35004826-35004878)
[»] chr1 (9 HSPs)
chr1 (17-147)||(33403066-33403196)
chr1 (21-131)||(35577468-35577578)
chr1 (46-128)||(28442949-28443031)
chr1 (51-140)||(48025571-48025660)
chr1 (47-155)||(50069204-50069312)
chr1 (47-128)||(49033701-49033781)
chr1 (55-125)||(11821190-11821260)
chr1 (77-129)||(39650222-39650274)
chr1 (47-139)||(47488997-47489089)
[»] scaffold0041 (1 HSPs)
scaffold0041 (30-155)||(24318-24443)
[»] chr8 (5 HSPs)
chr8 (20-157)||(34276190-34276327)
chr8 (46-113)||(23558952-23559019)
chr8 (47-137)||(33800468-33800558)
chr8 (55-117)||(9384654-9384716)
chr8 (48-128)||(43995935-43996014)
[»] chr7 (7 HSPs)
chr7 (49-155)||(44552674-44552780)
chr7 (49-128)||(26604145-26604224)
chr7 (46-155)||(41799995-41800104)
chr7 (53-113)||(38790927-38790985)
chr7 (71-155)||(31823589-31823673)
chr7 (47-155)||(38792018-38792126)
chr7 (47-128)||(30359730-30359812)
[»] chr6 (4 HSPs)
chr6 (46-128)||(17436063-17436145)
chr6 (64-156)||(14154564-14154656)
chr6 (64-157)||(35060882-35060975)
chr6 (81-125)||(23608457-23608501)


Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 297
Target Start/End: Complemental strand, 5504874 - 5504598
Alignment:
Q  17 catgcgctacgtaacttaagctatgttctccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattt 116  Q
    |||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||    
T  5504874 catgcgctacgtgacttaatttatgttctccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggcattttcgacttttactt 5504775  T
Q  117 taggaatgagcgatagtgtttgggaaatgagtagaattcaatattcaattgaaccagacaaaccaagaatgcaacttctcttgtgattggggtccccctg 216  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5504774 taggaatgagcgatagtgtttgggtaatgagtagaattcaatattcaattgaacctgacaaaccaagaatgcaacttctcttgtgattggggtccccctg 5504675  T
Q  217 gtcaacatctaccttactcacgtcaccatctttttaacgttaatgtgaggaataaataaattgaccgttcaactcatctct 297  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    ||||||||||||||||||||||||    
T  5504674 gtcaacatctaccttactcacttcaccatctttttaacgttaatgtgaggaat----aaattgaccgttcaactcatctct 5504598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 30 - 155
Target Start/End: Original strand, 33144137 - 33144262
Alignment:
Q  30 acttaagctatgttctccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcga 129  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||  | | |||| |||||||||||||||    
T  33144137 acttaagttatgttctccttataactagcgcatgttaactcaccctacgcaagttaacatgcgtaggggcatttcggtcatttactttaggaatgagcga 33144236  T
Q  130 tagtgtttgggaaatgagtagaattc 155  Q
    || |||||||| |||||  |||||||    
T  33144237 tattgtttgggtaatgaacagaattc 33144262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 30 - 129
Target Start/End: Original strand, 30491748 - 30491847
Alignment:
Q  30 acttaagctatgttctccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcga 129  Q
    ||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |  |||||||||||||| ||| |||||||||||    
T  30491748 acttaagttaagttctccttataactagcgcatgttaactcacactacgcaagttaacatgcgtagggacattttcgacttttactttgggaatgagcga 30491847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 157
Target Start/End: Complemental strand, 6702479 - 6702368
Alignment:
Q  46 ccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcgatagtgtttgggaaatg 145  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||  || ||||| |||||||| |||  |||||||||| | | |||||| ||||    
T  6702479 ccttataactagtgcatgttaactcacgctacgcaagttaacatgcgtatgggcatttttgacttttactttgagaatgagcgaaactatttgggcaatg 6702380  T
Q  146 agtagaattcaa 157  Q
    || |||||||||    
T  6702379 agcagaattcaa 6702368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 156
Target Start/End: Complemental strand, 40008819 - 40008711
Alignment:
Q  48 ttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcgatagtgtttgggaaatgag 147  Q
    ||||||| ||||||  |||| |||||||||||| ||||||||||| || || ||||| ||| |||| |||  |||||||||||| ||||| || ||||||    
T  40008819 ttataaccagcgcaacttaagtcacgctacgcatgttaacatgcgcaggggcattttagacatttactttgagaatgagcgataatgtttaggtaatgag 40008720  T
Q  148 tagaattca 156  Q
     ||||||||    
T  40008719 cagaattca 40008711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 131
Target Start/End: Complemental strand, 4845418 - 4845325
Alignment:
Q  38 tatgttctccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcgata 131  Q
    |||||||  |||||||||||||||  |||| ||||||||| || ||||||||||| ||  | ||||| ||| |||| |||||||||||||||||    
T  4845418 tatgttcctcttataactagcgcaatttaagtcacgctacacatgttaacatgcgcaggagcattttagacatttactttaggaatgagcgata 4845325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 155
Target Start/End: Original strand, 4846932 - 4847006
Alignment:
Q  82 gttaacatgcgtag-aggtattttcgacttttattttaggaatgagcgatagtgtttgggaaatgagtagaattc 155  Q
    ||||||||||| || ||||||||| ||| |||| ||| | |||||||||||| ||||||| ||||||||||||||    
T  4846932 gttaacatgcgcaggaggtattttagacatttactttggaaatgagcgatagcgtttgggtaatgagtagaattc 4847006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 157
Target Start/End: Original strand, 1975272 - 1975382
Alignment:
Q  47 cttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcgatagtgtttgggaaatga 146  Q
    |||||||||||||||  |||| |||||||||||| ||||||||||| |  || ||||| ||| |||| ||| | ||||||| ||  ||||| |  |||||    
T  1975272 cttataactagcgcaacttaagtcacgctacgcatgttaacatgcgcatgggcattttggacatttactttggaaatgagcaatgctgtttagataatga 1975371  T
Q  147 gtagaattcaa 157  Q
    | |||||||||    
T  1975372 gcagaattcaa 1975382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 131
Target Start/End: Complemental strand, 30489796 - 30489747
Alignment:
Q  82 gttaacatgcgtagaggtattttcgacttttattttaggaatgagcgata 131  Q
    |||||||||||||| || |||||||||||||| ||| ||||||| |||||    
T  30489796 gttaacatgcgtaggggcattttcgacttttactttgggaatgaacgata 30489747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 7e-49; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 21 - 155
Target Start/End: Original strand, 15041950 - 15042084
Alignment:
Q  21 cgctacgtaacttaagctatgttctccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttagg 120  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||| ||    
T  15041950 cgctgcgtaacttaagttatgttctccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtaggggcattttcgacttttactttggg 15042049  T
Q  121 aatgagcgatagtgtttgggaaatgagtagaattc 155  Q
    ||||||||||| |||||||| |||||| |||||||    
T  15042050 aatgagcgatattgtttgggtaatgagcagaattc 15042084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 21 - 155
Target Start/End: Original strand, 34086784 - 34086917
Alignment:
Q  21 cgctacgtaacttaagctatgttctccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttagg 120  Q
    |||| ||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||| ||    
T  34086784 cgctgcgtgacttaagttacgttctccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtaggggcattttcgacttttactttggg 34086883  T
Q  121 aatgagcgatagtgtttgggaaatgagtagaattc 155  Q
    ||||||||||| ||||| ||||||||| |||||||    
T  34086884 aatgagcgatactgttt-ggaaatgagcagaattc 34086917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 30 - 155
Target Start/End: Complemental strand, 19866858 - 19866733
Alignment:
Q  30 acttaagctatgttctccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcga 129  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| ||| |||||||||||    
T  19866858 acttaagttacgttctccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtaggggcatttttgacttttactttgggaatgagcga 19866759  T
Q  130 tagtgtttgggaaatgagtagaattc 155  Q
    || |||||||| |||||| |||||||    
T  19866758 tactgtttgggtaatgagcagaattc 19866733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 45 - 147
Target Start/End: Original strand, 7666930 - 7667032
Alignment:
Q  45 tccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcgatagtgtttgggaaat 144  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||| |||||||||||| ||||||||||||| |||||||| |||    
T  7666930 tccttataactagcgcatgttaactcacgctatgcaagttaacatgcgtaggggcatttttgacttttattttgggaatgagcgatactgtttgggtaat 7667029  T
Q  145 gag 147  Q
    |||    
T  7667030 gag 7667032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 46 - 137
Target Start/End: Original strand, 39688721 - 39688812
Alignment:
Q  46 ccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcgatagtgttt 137  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||| |||| ||||||||||||||||| |||  |||||||| ||| |||||    
T  39688721 ccttataactagcgcgtgttaactcacgctacgaaagttaacatgtgtaggggtattttcgacttttactttgagaatgagcaatactgttt 39688812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 156
Target Start/End: Original strand, 53827614 - 53827740
Alignment:
Q  30 acttaagctatgttctccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcga 129  Q
    ||||||| | |||||  |||||||||||||||  |||| |||||||||||| |||||||||||||| || ||||| ||| |||| ||| |||||||||||    
T  53827614 acttaagttgtgttcctcttataactagcgcaacttaagtcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcga 53827713  T
Q  130 tagtgtttgggaaatgagtagaattca 156  Q
    || | ||| || |||||| ||||||||    
T  53827714 tactatttaggtaatgagcagaattca 53827740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 137
Target Start/End: Original strand, 3860792 - 3860898
Alignment:
Q  30 acttaagctatgttctccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcga 129  Q
    |||||||  |||||| ||||||||||| || ||||||||||||||||||||||||||||| ||||| ||  ||||| ||||||| |||  ||||||||||    
T  3860792 acttaagtcatgttcgccttataactaacgtatgttaactcacgctacgcaagttaacatacgtag-ggcgttttcaacttttactttgagaatgagcga 3860890  T
Q  130 tagtgttt 137  Q
    || |||||    
T  3860891 tactgttt 3860898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 6162669 - 6162733
Alignment:
Q  64 ttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcg 128  Q
    |||| |||||||||||| |||||||||||||| || ||||| |||||||| ||| ||||||||||    
T  6162669 ttaagtcacgctacgcatgttaacatgcgtaggggcattttggacttttactttgggaatgagcg 6162733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 19872140 - 19872193
Alignment:
Q  76 acgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcga 129  Q
    ||||| ||||||||||||||||| ||||| | | ||||||||||||||||||||    
T  19872140 acgcatgttaacatgcgtagaggcattttagtcatttattttaggaatgagcga 19872193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 155
Target Start/End: Complemental strand, 42381715 - 42381615
Alignment:
Q  55 tagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcgatagtgtttgggaaatgagtagaatt 154  Q
    |||||||  |||| |||||||||||| |||||||||||||  || ||||| ||| |||| ||| | ||||||||||  ||||| || |||||| ||||||    
T  42381715 tagcgcaacttaagtcacgctacgcatgttaacatgcgtaagggcattttggacatttactttggaaatgagcgatgttgtttaggtaatgagcagaatt 42381616  T
Q  155 c 155  Q
    |    
T  42381615 c 42381615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 16967988 - 16968063
Alignment:
Q  82 gttaacatgcgtagaggtattttcgacttttattttaggaatgagcgatagtgtttgggaaatgagtagaattcaa 157  Q
    |||||||| ||||| |||||||| ||| ||||||||||||||||| ||||  ||||  | |||||| |||||||||    
T  16967988 gttaacatacgtaggggtattttagacatttattttaggaatgagtgatacggtttaagtaatgagcagaattcaa 16968063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 128
Target Start/End: Original strand, 44836448 - 44836529
Alignment:
Q  47 cttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcg 128  Q
    |||||||||||||||  |||| ||||||||| || |||||||||||||| || | | | ||| |||| ||||| ||||||||    
T  44836448 cttataactagcgcaacttaagtcacgctacacatgttaacatgcgtaggggcaatatggacatttactttagaaatgagcg 44836529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 4969966 - 4969902
Alignment:
Q  64 ttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcg 128  Q
    ||||||||||   |||||||||||   ||||| ||||||||||||||||| ||| ||||||||||    
T  4969966 ttaactcacgtagcgcaagttaactcacgtaggggtattttcgacttttactttgggaatgagcg 4969902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 16931546 - 16931470
Alignment:
Q  55 tagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcgata 131  Q
    |||||||  |||| ||||| |||||| ||||||||||| |||| ||| || ||| |||| |||||||| ||||||||    
T  16931546 tagcgcaacttaaatcacggtacgcatgttaacatgcgcagagatatattggacatttactttaggaacgagcgata 16931470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 21 - 156
Target Start/End: Complemental strand, 24972524 - 24972389
Alignment:
Q  21 cgctacgtaacttaagctatgttctccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttagg 120  Q
    |||| ||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||| ||||||    
T  24972524 cgctgcgtgacttaagttacgttctccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtaggggtgtttttgacttttactttagg 24972425  T
Q  121 aatgagcgatagtgtttgggaaatgagtagaattca 156  Q
    ||||||||||| ||||| || |||||| ||||||||    
T  24972424 aatgagcgatactgtttaggtaatgagcagaattca 24972389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 41 - 155
Target Start/End: Complemental strand, 36499020 - 36498906
Alignment:
Q  41 gttctccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcgatagtgtttggg 140  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||| || |||||| ||||||| ||| ||||||||||||| |||||| |    
T  36499020 gttctccttataactagcgcatgttaactcacgctatgcaagttaacatgcataggggcattttcaacttttactttgggaatgagcgatactgtttgag 36498921  T
Q  141 aaatgagtagaattc 155  Q
     |||||| |||||||    
T  36498920 taatgagcagaattc 36498906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 30 - 156
Target Start/End: Complemental strand, 12586310 - 12586183
Alignment:
Q  30 acttaagctatgttctccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggta-ttttcgacttttattttaggaatgagcg 128  Q
    ||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||| ||| || | ||||||||||||| ||| ||||||||||    
T  12586310 acttaagttacgttctccttataactagcgcatgttaactcacgctatgcaagttaacatgcataggggcatttttcgacttttactttgggaatgagcg 12586211  T
Q  129 atagtgtttgggaaatgagtagaattca 156  Q
     || ||||| || |||||| ||||||||    
T  12586210 gtattgtttaggtaatgagcagaattca 12586183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 21 - 155
Target Start/End: Complemental strand, 55523859 - 55523725
Alignment:
Q  21 cgctacgtaacttaagctatgttctccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttagg 120  Q
    |||| ||| |||||||  ||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| || |||||||||||||| |||       
T  55523859 cgctgcgtgacttaagtcatgttctccttataactagcgcatgttaactcaagatacacaagttaacatgcgtaggggcattttcgacttttactttgaa 55523760  T
Q  121 aatgagcgatagtgtttgggaaatgagtagaattc 155  Q
    ||||||||||| |||||||  |||||| |||||||    
T  55523759 aatgagcgataatgtttggataatgagcagaattc 55523725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 42 - 155
Target Start/End: Complemental strand, 40451044 - 40450931
Alignment:
Q  42 ttctccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcgatagtgtttggga 141  Q
    |||||||||| |||| |||||||||||||| ||||| ||||||||||||||||| || |||||||||||||| ||| ||||||||||||| ||||| ||     
T  40451044 ttctccttattactaacgcatgttaactcaagctacacaagttaacatgcgtaggggcattttcgacttttactttgggaatgagcgatactgtttaggt 40450945  T
Q  142 aatgagtagaattc 155  Q
    |||||| |||||||    
T  40450944 aatgagcagaattc 40450931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 21 - 147
Target Start/End: Original strand, 636528 - 636654
Alignment:
Q  21 cgctacgtaacttaagctatgttctccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttagg 120  Q
    |||||||| |||||||  ||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |  || |||||| | ||||| ||| |     
T  636528 cgctacgtgacttaagtcatgttctccttataattagcgcattttaactcacgctacgcaagttaacatgcgcatgggcattttcaatttttactttgga 636627  T
Q  121 aatgagcgatagtgtttgggaaatgag 147  Q
    ||| ||||||| |||||||| ||||||    
T  636628 aataagcgatactgtttgggtaatgag 636654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 36217978 - 36217899
Alignment:
Q  47 cttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgag 126  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||| || ||||| |||||||| ||| ||||||||    
T  36217978 cttataactagtgcatgttaactcacgctacgtaagttaacatgcgtaggggcattttggacttttactttgggaatgag 36217899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 41 - 147
Target Start/End: Complemental strand, 40923490 - 40923384
Alignment:
Q  41 gttctccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcgatagtgtttggg 140  Q
    |||| |||||||||||| |||||||||||||| |||||||||||||||| ||||| || |||||  ||||||| ||| | ||||| ||||| |||| |||    
T  40923490 gttcgccttataactagtgcatgttaactcactctacgcaagttaacatacgtaggggcattttttacttttactttggaaatgaacgatattgttaggg 40923391  T
Q  141 aaatgag 147  Q
     ||||||    
T  40923390 taatgag 40923384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 155
Target Start/End: Original strand, 28798098 - 28798223
Alignment:
Q  30 acttaagctatgttctccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcga 129  Q
    ||||||| || ||||  |||||||||||||||  |||| |||| |||| || ||||||||| | || || ||||| ||| |||| |||  ||||||||||    
T  28798098 acttaagttacgttcctcttataactagcgcaacttaagtcacactacacatgttaacatgtgcaggggcattttggacatttactttgagaatgagcga 28798197  T
Q  130 tagtgtttgggaaatgagtagaattc 155  Q
    || |||||||| |||||| |||||||    
T  28798198 tactgtttgggtaatgagcagaattc 28798223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 127
Target Start/End: Complemental strand, 38677014 - 38676967
Alignment:
Q  80 aagttaacatgcgtagaggtattttcgacttttattttaggaatgagc 127  Q
    ||||||||||||||||||||||||| ||| |||||||| |||||||||    
T  38677014 aagttaacatgcgtagaggtattttggacatttattttgggaatgagc 38676967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 157
Target Start/End: Original strand, 33164475 - 33164585
Alignment:
Q  47 cttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcgatagtgtttgggaaatga 146  Q
    |||||||||||| ||  |||| |||||||||||| |||||||||||||| || ||||| ||| |||| |||  |||||||||  |   |||||| |||||    
T  33164475 cttataactagcacaacttaagtcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgagaatgagcggaaccatttgggtaatga 33164574  T
Q  147 gtagaattcaa 157  Q
    | |||||||||    
T  33164575 gcagaattcaa 33164585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 138
Target Start/End: Original strand, 42099502 - 42099587
Alignment:
Q  53 actagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcgatagtgtttg 138  Q
    |||||||||  |||| |||||||||||| ||||||||||| ||  ||||||| ||| |||| ||| | ||||||||||| ||||||    
T  42099502 actagcgcaacttaagtcacgctacgcatgttaacatgcgcaggtgtattttggacatttactttggaaatgagcgatattgtttg 42099587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 156
Target Start/End: Original strand, 46817419 - 46817511
Alignment:
Q  64 ttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcgatagtgtttgggaaatgagtagaattca 156  Q
    |||| ||||||  |||| |||||||||||||| || |||||  || |||| |||| |||||||||||| ||||  || |||||| ||||||||    
T  46817419 ttaagtcacgcagcgcatgttaacatgcgtaggggcattttgaacatttactttaagaatgagcgatactgttcaggtaatgagcagaattca 46817511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 53267771 - 53267819
Alignment:
Q  47 cttataactagcgcatgttaactcacgctacgcaagttaacatgcgtag 95  Q
    |||||||||||||||  |||| |||||||||| | ||||||||||||||    
T  53267771 cttataactagcgcaacttaagtcacgctacgtatgttaacatgcgtag 53267819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 11573767 - 11573631
Alignment:
Q  21 cgctacgtaacttaagctatgttctccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttagg 120  Q
    |||| ||| ||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||| ||||| || ||||| |||||||| ||| ||    
T  11573767 cgctgcgtgacttaagttacgttctccttataactagcacatgttaactcacgctacgcaagttaacatacgtaggggcatttttgacttttactttggg 11573668  T
Q  121 aatgagcgatagtgtttgggaaatgagtagaattcaa 157  Q
    ||||||||||| |||||||| |||||| |||||||||    
T  11573667 aatgagcgatattgtttgggtaatgagcagaattcaa 11573631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 51 - 139
Target Start/End: Complemental strand, 24928762 - 24928674
Alignment:
Q  51 taactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcgatagtgtttgg 139  Q
    ||||||||||||||||||||||||||||||||||||||||  |||  | |||||||||||||| ||| ||||||||| ||| |||||||    
T  24928762 taactagcgcatgttaactcacgctacgcaagttaacatgtttaggagcattttcgacttttactttgggaatgagccatactgtttgg 24928674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 47 - 129
Target Start/End: Original strand, 37892978 - 37893060
Alignment:
Q  47 cttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcga 129  Q
    |||||| ||| ||||||||||||||||||||| |||||||||||| ||| || ||||| |||||||| ||| |||||||||||    
T  37892978 cttatacctaacgcatgttaactcacgctacgtaagttaacatgcataggggcattttggacttttactttgggaatgagcga 37893060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 155
Target Start/End: Complemental strand, 25678401 - 25678272
Alignment:
Q  30 acttaagctatgttctcctta----taactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatga 125  Q
    |||||||| | ||||||||||    ||||||||||||||||||||| ||||||||||||||||||  |||  | ||||| |||||||| |||   |||||    
T  25678401 acttaagccacgttctccttataattaactagcgcatgttaactcatgctacgcaagttaacatgtttaggagcatttttgacttttactttgaaaatga 25678302  T
Q  126 gcgatagtgtttgggaaatgagtagaattc 155  Q
    |||||| |||||||  |||||| |||||||    
T  25678301 gcgatactgtttggataatgagcagaattc 25678272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 128
Target Start/End: Original strand, 12969234 - 12969314
Alignment:
Q  47 cttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcg 128  Q
    |||||||||||||||  |||| |||||||||||| |||||||||||||| || |||||  ||||||| ||| ||||||||||    
T  12969234 cttataactagcgcaacttaagtcacgctacgcatgttaacatgcgtaggggcattttgaacttttacttt-ggaatgagcg 12969314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 140
Target Start/End: Complemental strand, 42119265 - 42119172
Alignment:
Q  47 cttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcgatagtgtttggg 140  Q
    |||||||||||||||  |||| ||||||||| || |||||||||||||| || ||||| ||| |||| ||| ||| ||| ||||| ||||||||    
T  42119265 cttataactagcgcaacttaagtcacgctacacatgttaacatgcgtaggggcattttggacatttactttgggattgaacgatattgtttggg 42119172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 86
Target Start/End: Complemental strand, 939667 - 939628
Alignment:
Q  47 cttataactagcgcatgttaactcacgctacgcaagttaa 86  Q
    |||| |||||||||||||||||||||||||| ||||||||    
T  939667 cttacaactagcgcatgttaactcacgctacacaagttaa 939628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 156
Target Start/End: Original strand, 18394970 - 18395049
Alignment:
Q  77 cgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcgatagtgtttgggaaatgagtagaattca 156  Q
    |||| ||||||||||  ||||| ||||| |||  ||| ||| ||||||||||||| |||||||| |||||| ||||||||    
T  18394970 cgcatgttaacatgcacagaggcattttggacaattactttgggaatgagcgatattgtttgggtaatgagcagaattca 18395049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 165
Target Start/End: Complemental strand, 2154309 - 2154252
Alignment:
Q  108 cttttattttaggaatgagcgatagtgtttgggaaatgagtagaattcaatattcaat 165  Q
    |||||| ||| ||||||||||||| |||||||| |||||| ||||||| | |||||||    
T  2154309 cttttactttgggaatgagcgatattgtttgggtaatgagcagaattccaaattcaat 2154252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 104
Target Start/End: Original strand, 35004826 - 35004878
Alignment:
Q  52 aactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtatttt 104  Q
    |||||||||||||||||||||||  ||   ||||||||||||||| |||||||    
T  35004826 aactagcgcatgttaactcacgcagcgtgtgttaacatgcgtagaagtatttt 35004878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 6e-37; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 33403066 - 33403196
Alignment:
Q  17 catgcgctacgtaacttaagctatgttctccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattt 116  Q
    |||||||| ||| ||||||| || |||||||||||||||||| |||||||||||||| ||||||||||||||||||||| || |||||||||||||| ||    
T  33403066 catgcgctgcgtgacttaagttacgttctccttataactagcacatgttaactcacgttacgcaagttaacatgcgtaggggcattttcgacttttactt 33403165  T
Q  117 taggaatgagcgatagtgtttgggaaatgag 147  Q
    | | ||||||||||| |||||||| ||||||    
T  33403166 tggaaatgagcgatactgtttgggtaatgag 33403196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 21 - 131
Target Start/End: Original strand, 35577468 - 35577578
Alignment:
Q  21 cgctacgtaacttaagctatgttctccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttagg 120  Q
    |||| ||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||  |||| || |||||||||||||| ||| ||    
T  35577468 cgctgcgtgacttaagttacgttctccttataactagcgcatgttaactcacgctacgcaagttaacatatgtaggggcattttcgacttttactttggg 35577567  T
Q  121 aatgagcgata 131  Q
    |||||||||||    
T  35577568 aatgagcgata 35577578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 46 - 128
Target Start/End: Complemental strand, 28443031 - 28442949
Alignment:
Q  46 ccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcg 128  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||| ||||||| ||| ||||||||||    
T  28443031 ccttataactagcgcatgttaactcacgctacacaagttaacatgcgtaggggcattttcaacttttactttgggaatgagcg 28442949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 51 - 140
Target Start/End: Complemental strand, 48025660 - 48025571
Alignment:
Q  51 taactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcgatagtgtttggg 140  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  || |||||| |||| || ||| ||||||||||||| ||||||||    
T  48025660 taactagtgcatgttaactcacgctacgcaagttaacatgcgtaagggcattttcaacttctactttgggaatgagcgatactgtttggg 48025571  T

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Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 155
Target Start/End: Original strand, 50069204 - 50069312
Alignment:
Q  47 cttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcgatagtgtttgggaaatga 146  Q
    ||||||||||| |||  ||||||||||||||| | ||||||||||| || || ||||| ||| |||| ||| ||||||||||||  |||||||| |||||    
T  50069204 cttataactagtgcaacttaactcacgctacgtatgttaacatgcgcaggggcattttggacatttactttgggaatgagcgatgctgtttgggtaatga 50069303  T
Q  147 gtagaattc 155  Q
    | |||||||    
T  50069304 gcagaattc 50069312  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 128
Target Start/End: Original strand, 49033701 - 49033781
Alignment:
Q  47 cttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcg 128  Q
    |||| |||||||||||||||| | ||||||||||||||||  |||||||||| | ||| ||| |||| ||| ||||||||||    
T  49033701 cttacaactagcgcatgttaattaacgctacgcaagttaaattgcgtagaggca-tttggacatttactttgggaatgagcg 49033781  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 125
Target Start/End: Complemental strand, 11821260 - 11821190
Alignment:
Q  55 tagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatga 125  Q
    ||||||||||||||||||  |||| |||||||||||| |||  | ||||| |||||||| ||| |||||||    
T  11821260 tagcgcatgttaactcacaatacgtaagttaacatgcataggagcattttggacttttactttgggaatga 11821190  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 39650274 - 39650222
Alignment:
Q  77 cgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcga 129  Q
    |||| |||||||||||||| || ||||| ||| |||| |||||||||||||||    
T  39650274 cgcatgttaacatgcgtaggggcattttggacatttactttaggaatgagcga 39650222  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 139
Target Start/End: Original strand, 47488997 - 47489089
Alignment:
Q  47 cttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcgatagtgtttgg 139  Q
    |||||||||||||||  |||| ||||| |||||| ||||||||| | |   | ||||| ||| |||||||||  ||||||||||| |||||||    
T  47488997 cttataactagcgcaacttaagtcacgttacgcatgttaacatgtgcaagagcattttagacatttattttaaaaatgagcgatactgtttgg 47489089  T

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Target: scaffold0041 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 30 - 155
Target Start/End: Original strand, 24318 - 24443
Alignment:
Q  30 acttaagctatgttctccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcga 129  Q
    ||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||  ||||||| ||| |||||||||||    
T  24318 acttaagttacgttctcctgataactagcgcatgttaactcacgctacgcaagttaacatgcgtaggggcattttaaacttttactttgggaatgagcga 24417  T
Q  130 tagtgtttgggaaatgagtagaattc 155  Q
    || |||||| | |||||| |||||||    
T  24418 tactgtttgagtaatgagcagaattc 24443  T

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Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 157
Target Start/End: Complemental strand, 34276327 - 34276190
Alignment:
Q  20 gcgctacgtaacttaagctatgttctccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttag 119  Q
    ||||| ||| ||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||  ||||||| ||| |    
T  34276327 gcgctgcgtgacttaagttacgtcctccttataactagcgcatgttaactcacgctacgcaagttaacatgcataggggcattttttacttttactttgg 34276228  T
Q  120 gaatgagcgatagtgtttgggaaatgagtagaattcaa 157  Q
     ||| ||||||| |||||||| |||||| |||||||||    
T  34276227 aaataagcgatattgtttgggtaatgagcagaattcaa 34276190  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 113
Target Start/End: Original strand, 23558952 - 23559019
Alignment:
Q  46 ccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgactttta 113  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||| || ||||| ||||||||    
T  23558952 ccttataactagggcatgttaactcacgctacgtaagttaacatgcgtaggggcattttggactttta 23559019  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 47 - 137
Target Start/End: Original strand, 33800468 - 33800558
Alignment:
Q  47 cttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcgatagtgttt 137  Q
    ||||||||||| |||  |||| |||||||||||| ||||||||||| |  || ||||| ||| |||| ||||||||||||||||| |||||    
T  33800468 cttataactagtgcaacttaagtcacgctacgcatgttaacatgcgcaagggcattttagacatttactttaggaatgagcgatactgttt 33800558  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 117
Target Start/End: Complemental strand, 9384716 - 9384654
Alignment:
Q  55 tagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttatttt 117  Q
    |||||||||||||||||||||||||| |||||  ||||||| |  ||||| ||| ||||||||    
T  9384716 tagcgcatgttaactcacgctacgcatgttaagttgcgtagggacattttggacatttatttt 9384654  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 43996014 - 43995935
Alignment:
Q  48 ttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcg 128  Q
    |||||||||||||| ||||||||| ||  |||||||||||   |  || ||||||||||||||||| ||||| ||||||||    
T  43996014 ttataactagcgcaagttaactca-gcagcgcaagttaactcacacaggggtattttcgacttttactttagaaatgagcg 43995935  T

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Target: chr7 (Bit Score: 67; Significance: 9e-30; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 49 - 155
Target Start/End: Original strand, 44552674 - 44552780
Alignment:
Q  49 tataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcgatagtgtttgggaaatgagt 148  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||  | |||||||||||||| |||  |||||||||||| |||||||| ||||||     
T  44552674 tataactagcgcatgttaactcacgttacgcaagttaacatgcgtaggagcattttcgacttttactttgagaatgagcgatattgtttgggtaatgagc 44552773  T
Q  149 agaattc 155  Q
    |||||||    
T  44552774 agaattc 44552780  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 26604145 - 26604224
Alignment:
Q  49 tataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcg 128  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| || |||||  ||||||| |||  |||||||||    
T  26604145 tataactagcgcatgttaactcacgctacgtaagttaacatgcgtaggggcattttaaacttttactttgagaatgagcg 26604224  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 46 - 155
Target Start/End: Original strand, 41799995 - 41800104
Alignment:
Q  46 ccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcgatagtgtttgggaaatg 145  Q
    |||||||||||||| ||||||| ||| |||||| ||| |||||| ||||| |  |||||||||||||||||||  ||||| ||||| ||||| |  ||||    
T  41799995 ccttataactagcgtatgttaattcatgctacgtaagataacatacgtagggacattttcgacttttattttaaaaatgaacgatattgtttagataatg 41800094  T
Q  146 agtagaattc 155  Q
    || |||||||    
T  41800095 agcagaattc 41800104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 38790985 - 38790927
Alignment:
Q  53 actagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgactttta 113  Q
    ||||||||||||||| |||||||  ||| |||||||||||||| |||||||| ||||||||    
T  38790985 actagcgcatgttaagtcacgct--gcatgttaacatgcgtaggggtattttggactttta 38790927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 155
Target Start/End: Complemental strand, 31823673 - 31823589
Alignment:
Q  71 acgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcgatagtgtttgggaaatgagtagaattc 155  Q
    |||| ||||| ||||||||| | || || ||||| ||  |||||||| ||||||||||||| |||||||| |||||| |||||||    
T  31823673 acgcaacgcatgttaacatgtgcaggggcattttggatatttattttgggaatgagcgatattgtttgggtaatgagcagaattc 31823589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 155
Target Start/End: Original strand, 38792018 - 38792126
Alignment:
Q  47 cttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcgatagtgtttgggaaatga 146  Q
    |||||||||||||||  |||| |||||||||||| |||| || | |||| |||||||| |||||||| |||  ||||||| || |   |||| | |||||    
T  38792018 cttataactagcgcaacttaagtcacgctacgcatgttatcaagtgtaggggtattttagacttttactttgagaatgagtgaaaccatttgagtaatga 38792117  T
Q  147 gtagaattc 155  Q
    |||||||||    
T  38792118 gtagaattc 38792126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 128
Target Start/End: Complemental strand, 30359812 - 30359730
Alignment:
Q  47 cttataactagcgcatgtt-aactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcg 128  Q
    ||||||||||||||||||| ||| ||||||||| ||||||||| || ||| |   |||| |||||||| ||| ||||||||||    
T  30359812 cttataactagcgcatgttaaacccacgctacgtaagttaacaagcatagggacgttttggacttttactttgggaatgagcg 30359730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 46 - 128
Target Start/End: Complemental strand, 17436145 - 17436063
Alignment:
Q  46 ccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcg 128  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||| ||| ||||||||||    
T  17436145 ccttataactagcgcatgttaacttacgctacgcaagttaacatgcgtagaggcattttagacttttactttgggaatgagcg 17436063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 156
Target Start/End: Original strand, 14154564 - 14154656
Alignment:
Q  64 ttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcgatagtgtttgggaaatgagtagaattca 156  Q
    |||| ||||||||| || ||||||||||| || |  ||||| ||| |||||||||||||||||||||   ||||||| |||||  ||||||||    
T  14154564 ttaagtcacgctacacatgttaacatgcgcagggacattttggacatttattttaggaatgagcgattcggtttgggtaatgatcagaattca 14154656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 157
Target Start/End: Original strand, 35060882 - 35060975
Alignment:
Q  64 ttaactcacgctacgcaagttaacatgcgtagaggtattttcgacttttattttaggaatgagcgatagtgtttgggaaatgagtagaattcaa 157  Q
    |||| |||||||||||| |||||||||||||| || ||||| ||| |||| ||| | ||||||||  |   |||||| |||||| |||||||||    
T  35060882 ttaagtcacgctacgcatgttaacatgcgtaggggcattttggacatttactttggaaatgagcggaatcatttgggtaatgagcagaattcaa 35060975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 23608501 - 23608457
Alignment:
Q  81 agttaacatgcgtagaggtattttcgacttttattttaggaatga 125  Q
    ||||||||||||||| | |||||| |||||||||||| |||||||    
T  23608501 agttaacatgcgtagggatattttagacttttattttgggaatga 23608457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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