View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14797_low_1 (Length: 414)
Name: NF14797_low_1
Description: NF14797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14797_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 27 - 400
Target Start/End: Complemental strand, 52479687 - 52479314
Alignment:
| Q |
27 |
tcagcttcataatacaatgcggtgaattaagagattgagaaagagtattgaagaacgcacaaatgcaggacatgatccaacgtaagcgagaacaagatta |
126 |
Q |
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| T |
52479687 |
tcagcttcataatacaatgcggtgaattaagagattgagaaagagtattgaagaacgcacaaatgcaggacatgatccaatgtaagcgagaacaagatta |
52479588 |
T |
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| Q |
127 |
gcagctccttcgcctctgtaaacccaatcatctgattccttctcccttaaagtaacctccattcaacaaattttacctgaaaatgtgaatgatgatcgtt |
226 |
Q |
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| T |
52479587 |
gcagctccttcgcctctgtaaacccaatcatctgcttccttctcccttaaagtaacctccattcaacaaattttacctgaaaatgtgaatgatgatcgtt |
52479488 |
T |
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| Q |
227 |
gaagcatttcatcaaacacctaaaagacactcgaaatcaattgaagaaaaagtataagaaaatacctagagcttaaatagaatcttcgaagcagtaatta |
326 |
Q |
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| T |
52479487 |
gaagcatttcatcaaacacctaaaagacactcgaaatctattgaagaaaaagtataagaaaatacctagagcttaaatagaatcttcgaagcagtaatta |
52479388 |
T |
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| Q |
327 |
ggtgcattaattgtgataatgtgatggaatatggttaacaaattcttctcaaatgttatcgttccaattttttg |
400 |
Q |
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| T |
52479387 |
agtgcattaattgtgataatgtgatggaatatggttcacaaattcttctcaaatgttatcgtttcaattttttg |
52479314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 154
Target Start/End: Complemental strand, 7200332 - 7200286
Alignment:
| Q |
108 |
gtaagcgagaacaagattagcagctccttcgcctctgtaaacccaat |
154 |
Q |
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| T |
7200332 |
gtaagagagaacaagattagcagcaccttcacctctataaacccaat |
7200286 |
T |
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