View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14797_low_4 (Length: 275)

Name: NF14797_low_4
Description: NF14797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14797_low_4
NF14797_low_4
[»] chr8 (6 HSPs)
chr8 (16-268)||(29388653-29388904)
chr8 (22-181)||(18450472-18450631)
chr8 (21-175)||(20685300-20685454)
chr8 (22-182)||(14755935-14756098)
chr8 (83-159)||(16722051-16722128)
chr8 (208-260)||(20685216-20685268)
[»] scaffold0067 (2 HSPs)
scaffold0067 (27-187)||(12722-12882)
scaffold0067 (27-187)||(19780-19940)
[»] chr4 (10 HSPs)
chr4 (24-193)||(18618526-18618695)
chr4 (22-185)||(20309759-20309922)
chr4 (22-187)||(20572594-20572760)
chr4 (51-186)||(45080230-45080366)
chr4 (71-162)||(2758011-2758102)
chr4 (29-181)||(2767592-2767744)
chr4 (33-175)||(17262724-17262870)
chr4 (44-170)||(33572984-33573118)
chr4 (90-159)||(17265614-17265683)
chr4 (208-259)||(2758148-2758199)
[»] chr2 (4 HSPs)
chr2 (27-191)||(23469447-23469612)
chr2 (47-193)||(29798903-29799051)
chr2 (29-143)||(17502377-17502494)
chr2 (65-170)||(13312867-13312973)
[»] chr5 (4 HSPs)
chr5 (21-183)||(23909708-23909872)
chr5 (27-162)||(29633850-29633988)
chr5 (22-173)||(17713726-17713873)
chr5 (127-182)||(16510228-16510286)
[»] chr6 (6 HSPs)
chr6 (21-260)||(22337258-22337497)
chr6 (22-187)||(17795446-17795611)
chr6 (65-260)||(22724549-22724745)
chr6 (21-171)||(22266986-22267137)
chr6 (21-125)||(23143161-23143265)
chr6 (84-145)||(13256282-13256343)
[»] scaffold0039 (2 HSPs)
scaffold0039 (21-260)||(64147-64385)
scaffold0039 (21-260)||(65982-66220)
[»] chr7 (10 HSPs)
chr7 (86-183)||(4007067-4007164)
chr7 (86-183)||(4012459-4012556)
chr7 (22-168)||(14616345-14616491)
chr7 (22-175)||(14616008-14616161)
chr7 (33-162)||(16030904-16031037)
chr7 (29-191)||(8835298-8835459)
chr7 (98-152)||(11733134-11733188)
chr7 (208-260)||(15080276-15080328)
chr7 (208-260)||(10339960-10340012)
chr7 (27-96)||(15052878-15052947)
[»] scaffold0027 (2 HSPs)
scaffold0027 (22-175)||(52930-53083)
scaffold0027 (211-260)||(52846-52895)
[»] chr3 (3 HSPs)
chr3 (21-191)||(14753229-14753401)
chr3 (65-191)||(21487124-21487244)
chr3 (94-183)||(23330586-23330679)
[»] chr1 (9 HSPs)
chr1 (27-166)||(17052103-17052245)
chr1 (22-166)||(17061334-17061481)
chr1 (73-187)||(18951928-18952043)
chr1 (98-170)||(41580890-41580962)
chr1 (107-185)||(17051643-17051721)
chr1 (109-191)||(16884328-16884411)
chr1 (71-131)||(17107142-17107204)
chr1 (210-260)||(17061526-17061576)
chr1 (22-92)||(14981496-14981566)
[»] scaffold0079 (1 HSPs)
scaffold0079 (70-162)||(16634-16726)


Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 268
Target Start/End: Complemental strand, 29388904 - 29388653
Alignment:
Q  16 ctaatttcaagggattgcatgcaaactcgagattcgaagaccttgtgactgtctaatttcaagagaacttgaagattggatcttgtgtgattgcttagca 115  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29388904 ctaatttcaagggattgcatgcaagctctagattcgaagaccttgtgactgtctaatttcaagagaacttgaagattggatcttgtgtgattgcttagca 29388805  T
Q  116 tagaagattatgaatcgaaggaatctttgttatcatacatttgtaaacattttcatcatagtggaagcccgtgatataagcgnnnnnnnatcacgaagag 215  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |       ||||| |||||    
T  29388804 tagaagattatgaatcgaaagaatctttgttatcatacatttgtacacattttcatcatagtggaagcccgtgatagaagtg-ttttttatcactaagag 29388706  T
Q  216 aggatgtacccctagtgaggtcgaaaagggaaaacctctataaatgatgatgt 268  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  29388705 aggatgtacccctagtgaggtcgaaaaggggaaacctctataaatgttgatgt 29388653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 22 - 181
Target Start/End: Original strand, 18450472 - 18450631
Alignment:
Q  22 tcaagggattgcatgcaaactcgagattcgaagaccttgtgactgtctaatttcaagagaacttgaagattggatcttgtgtgattgcttagcatagaag 121  Q
    |||| ||||||||||||| || ||||||| |||| |||||| |||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  18450472 tcaaaggattgcatgcaagcttgagattcaaagatcttgtggctgtgtaatttcaagagttcttgaagattggatcttgtgtgattgcttagcatagaag 18450571  T
Q  122 attatgaatcgaaggaatctttgttatcatacatttgtaaacattttcatcatagtggaa 181  Q
    |||| ||||||||| ||||||||| |||||||| ||||||| ||||||||||||||||||    
T  18450572 attaggaatcgaagaaatctttgtaatcatacacttgtaaatattttcatcatagtggaa 18450631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 175
Target Start/End: Complemental strand, 20685454 - 20685300
Alignment:
Q  21 ttcaagggattgcatgcaaactcgagattcgaagaccttgtgactgtctaatttcaagagaacttgaagattggatcttgtgtgattgcttagcatagaa 120  Q
    ||||| ||||||||||||| || ||| |||||||| ||| || ||||| || ||||||||   |||||||||||||||||||||||||||||||||||||    
T  20685454 ttcaaaggattgcatgcaagcttgaggttcgaagatcttatggctgtccaaattcaagaggttttgaagattggatcttgtgtgattgcttagcatagaa 20685355  T
Q  121 gattatgaatcgaaggaatctttgttatcatacatttgtaaacattttcatcata 175  Q
     |||| |||||||| ||||||||||  ||||||| ||||||||||||||||||||    
T  20685354 cattaggaatcgaaagaatctttgtattcatacacttgtaaacattttcatcata 20685300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 22 - 182
Target Start/End: Complemental strand, 14756098 - 14755935
Alignment:
Q  22 tcaagggattgcatgcaaactcgagattcgaagaccttgtgactgtctaatttcaagagaacttgaagattggatcttgtgtgattgcttagcatagaag 121  Q
    |||| ||||||||||||  || |||||||||||||||| || ||  |  ||||||||||| ||||||||||| |||| ||||||||||||  |||| | |    
T  14756098 tcaaaggattgcatgcatgcttgagattcgaagaccttttggctacccgatttcaagagagcttgaagattgaatctagtgtgattgcttgacataaatg 14755999  T
Q  122 att---atgaatcgaaggaatctttgttatcatacatttgtaaacattttcatcatagtggaag 182  Q
    |||   | ||||||| | ||||||||| |||||||| |||||||||||||||||||||||||||    
T  14755998 attaggaggaatcgatgaaatctttgtaatcatacacttgtaaacattttcatcatagtggaag 14755935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 16722051 - 16722128
Alignment:
Q  83 cttgaagattggatcttgtgtgattgcttagcatagaagattatg-aatcgaaggaatctttgttatcatacatttgt 159  Q
    |||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||| |||||||| ||||    
T  16722051 cttgaagattggatcttgtgtgattgcttagcatagaaaattaggaaatcgaaggaatctttgtaatcatacacttgt 16722128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 20685268 - 20685216
Alignment:
Q  208 acgaagagaggatgtacccctagtgaggtcgaaaagggaaaacctctataaat 260  Q
    ||||||||||||  || |||||||||||  ||||||||| |||||||||||||    
T  20685268 acgaagagaggacatatccctagtgaggaagaaaagggagaacctctataaat 20685216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 109; Significance: 7e-55; HSPs: 2)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 27 - 187
Target Start/End: Complemental strand, 12882 - 12722
Alignment:
Q  27 ggattgcatgcaaactcgagattcgaagaccttgtgactgtctaatttcaagagaacttgaagattggatcttgtgtgattgcttagcatagaagattat 126  Q
    |||||||||||||||| |||||||||||| |||||| |||||||| ||||||||  ||||||||||||||||||||||||| ||||| |||||||||| |    
T  12882 ggattgcatgcaaacttgagattcgaagatcttgtggctgtctaaattcaagaggtcttgaagattggatcttgtgtgattacttagtatagaagattgt 12783  T
Q  127 gaatcgaaggaatctttgttatcatacatttgtaaacattttcatcatagtggaagcccgt 187  Q
    ||||||||||||||||||| |||||||  ||||||||||||||||| ||||||||||||||    
T  12782 gaatcgaaggaatctttgtaatcatacgcttgtaaacattttcatcgtagtggaagcccgt 12722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 27 - 187
Target Start/End: Complemental strand, 19940 - 19780
Alignment:
Q  27 ggattgcatgcaaactcgagattcgaagaccttgtgactgtctaatttcaagagaacttgaagattggatcttgtgtgattgcttagcatagaagattat 126  Q
    |||||||||||||||| ||||||| |||| |||||| |||||||| ||||||||  ||||||||||||||||||||||||| ||||| |||||||||| |    
T  19940 ggattgcatgcaaacttgagattctaagatcttgtggctgtctaaattcaagaggtcttgaagattggatcttgtgtgattacttagtatagaagattgt 19841  T
Q  127 gaatcgaaggaatctttgttatcatacatttgtaaacattttcatcatagtggaagcccgt 187  Q
    ||||||||||||||||||| |||||||  ||||||||||||||||| ||||||||||||||    
T  19840 gaatcgaaggaatctttgtaatcatacgcttgtaaacattttcatcgtagtggaagcccgt 19780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 6e-46; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 24 - 193
Target Start/End: Complemental strand, 18618695 - 18618526
Alignment:
Q  24 aagggattgcatgcaaactcgagattcgaagaccttgtgactgtctaatttcaagagaacttgaagattggatcttgtgtgattgcttagcatagaagat 123  Q
    |||||||||||||||| || ||||||| ||||||||||| ||||| |||||||||||  ||| |||||||||| |  | |||||||||||||||||||||    
T  18618695 aagggattgcatgcaagcttgagattcaaagaccttgtggctgtccaatttcaagaggtcttaaagattggatttattctgattgcttagcatagaagat 18618596  T
Q  124 tatgaatcgaaggaatctttgttatcatacatttgtaaacattttcatcatagtggaagcccgtgatata 193  Q
    || ||||| || |||||||||  |||||| ||||||||||||||||||||||||| ||||||||||||||    
T  18618595 taggaatcaaaagaatctttgcaatcatatatttgtaaacattttcatcatagtgaaagcccgtgatata 18618526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 22 - 185
Target Start/End: Complemental strand, 20309922 - 20309759
Alignment:
Q  22 tcaagggattgcatgcaaactcgagattcgaagaccttgtgactgtctaatttcaagagaacttgaagattggatcttgtgtgattgcttagcatagaag 121  Q
    |||| ||||| ||||||| || |||||| ||||||||| ||  |||| |||||||||||  ||||||||||||||||||||  ||||||||||||||||     
T  20309922 tcaaaggatttcatgcaatcttgagatttgaagaccttatggttgtccaatttcaagaggtcttgaagattggatcttgtgccattgcttagcatagaaa 20309823  T
Q  122 attatgaatcgaaggaatctttgttatcatacatttgtaaacattttcatcatagtggaagccc 185  Q
    |||| ||||||||| ||||||||| |||||||| ||||||||||||| ||||| ||||||||||    
T  20309822 attaggaatcgaagtaatctttgtaatcatacacttgtaaacattttaatcatggtggaagccc 20309759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 22 - 187
Target Start/End: Original strand, 20572594 - 20572760
Alignment:
Q  22 tcaagggattgcatgcaaactcgagattcgaagaccttgtgactgtctaatttcaagagaacttgaagattggatcttgtgtgattgcttagcatagaag 121  Q
    |||||||||||||| ||| || || ||| |||||||||||| |||||| | ||||||||  |||||||||||||||| |||| ||| ||||| ||||||     
T  20572594 tcaagggattgcatacaagcttgaaatttgaagaccttgtggctgtctgacttcaagaggccttgaagattggatctagtgtaatttcttagaatagaat 20572693  T
Q  122 attatga-atcgaaggaatctttgttatcatacatttgtaaacattttcatcatagtggaagcccgt 187  Q
    ||||| |  |||||||| ||||||| || |||||  ||||||||||||||||||||||||| |||||    
T  20572694 attataatttcgaaggattctttgtaataatacacctgtaaacattttcatcatagtggaatcccgt 20572760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 51 - 186
Target Start/End: Original strand, 45080230 - 45080366
Alignment:
Q  51 gaagaccttgtgactgtctaatttcaagagaacttgaagattggatcttgtgtgattgcttagcatagaagattatgaatcgaaggaatctttgttatca 150  Q
    |||||| ||||| || || |||||||||||| ||||||||||||| || ||||||||||||||||||||| |||| ||||| ||| ||||||||| ||||    
T  45080230 gaagactttgtggctttccaatttcaagagatcttgaagattggacctagtgtgattgcttagcatagaaaattaggaatcaaagaaatctttgtaatca 45080329  T
Q  151 tacatttgtaaaca-ttttcatcatagtggaagcccg 186  Q
     | |||| |||||| ||||||||||||||||| ||||    
T  45080330 catatttttaaacatttttcatcatagtggaaacccg 45080366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 71 - 162
Target Start/End: Original strand, 2758011 - 2758102
Alignment:
Q  71 atttcaagagaacttgaagattggatcttgtgtgattgcttagcatagaagattatgaatcgaaggaatctttgttatcatacatttgtaaa 162  Q
    ||||||||||| |||||||||||||||| |||||||||| ||||||||||||||| |||||||| |||||||||| ||||||| ||||||||    
T  2758011 atttcaagagagcttgaagattggatctagtgtgattgcctagcatagaagattaggaatcgaaagaatctttgtaatcatacttttgtaaa 2758102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 181
Target Start/End: Original strand, 2767592 - 2767744
Alignment:
Q  29 attgcatgcaaactcgagattcgaagaccttgtgactgtctaatttcaagagaacttgaagattggatcttgtgtgattgcttagcatagaagattatga 128  Q
    ||||||||||| || || |||||||||||||||| ||||   ||||||||||| |||||||||| ||||| |||| ||||| |||||||||||||||  |    
T  2767592 attgcatgcaagcttgaaattcgaagaccttgtggctgttagatttcaagagagcttgaagattagatctagtgttattgcctagcatagaagattagaa 2767691  T
Q  129 atcgaaggaatctttgttatcatacatttgtaaacattttcatcatagtggaa 181  Q
    ||  || |||||||||| ||||||   ||||||| |   ||||||||||||||    
T  2767692 atataaagaatctttgtaatcataatcttgtaaaaaaaatcatcatagtggaa 2767744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 33 - 175
Target Start/End: Complemental strand, 17262870 - 17262724
Alignment:
Q  33 catgcaaactcgagattcgaagaccttgtg-actgtctaatttcaagagaacttgaagattggatc--ttgtgtgattgcttagcatagaagattatgaa 129  Q
    ||||||| || ||| ||| |||||| |||| | |||| |||||||| |||| |||||||||||||   ||||| |||| |||||||||||| ||||||||    
T  17262870 catgcaagcttgaggttcaaagaccctgtggattgtccaatttcaaaagaatttgaagattggattctttgtgcgatttcttagcatagaaaattatgaa 17262771  T
Q  130 tcgaaggaatctttgttatcataca-tttgtaaacattttcatcata 175  Q
    |||||||||||||||| |||||||| ||| |||||| ||||| ||||    
T  17262770 tcgaaggaatctttgtaatcatacactttctaaacactttcaacata 17262724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 170
Target Start/End: Original strand, 33572984 - 33573118
Alignment:
Q  44 gagattcgaagaccttgtgactgtctaatttcaagagaacttgaagattggatc--ttgtgtgattgcttagcatagaa------gattatgaatcgaag 135  Q
    ||||||||||||||||| ||   ||||||||||| ||| ||||||||||||||   || ||||||||| ||| ||||||      ||||| |||| ||||    
T  33572984 gagattcgaagaccttgggataatctaatttcaaaagagcttgaagattggatgctttatgtgattgcctaggatagaaaaatcagattaggaattgaag 33573083  T
Q  136 gaatctttgttatcatacatttgtaaacattttca 170  Q
    |||||||||| | |||||| |||||||||||||||    
T  33573084 gaatctttgtgagcatacacttgtaaacattttca 33573118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 159
Target Start/End: Complemental strand, 17265683 - 17265614
Alignment:
Q  90 attggatcttgtgtgattgcttagcatagaagattatgaatcgaaggaatctttgttatcatacatttgt 159  Q
    |||| ||||||||||||| ||||||||||||| |||  |||| ||||||| ||||| |||||||||||||    
T  17265683 attgaatcttgtgtgatttcttagcatagaagtttaaaaatcaaaggaatatttgtgatcatacatttgt 17265614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 259
Target Start/End: Original strand, 2758148 - 2758199
Alignment:
Q  208 acgaagagaggatgtacccctagtgaggtcgaaaagggaaaacctctataaa 259  Q
    |||||||||||| ||||| |||||||||||||||| || |||||||||||||    
T  2758148 acgaagagaggacgtacctctagtgaggtcgaaaaagggaaacctctataaa 2758199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 9e-39; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 27 - 191
Target Start/End: Original strand, 23469447 - 23469612
Alignment:
Q  27 ggattgcatgcaaactcgagattcgaagaccttgtgactgtctaatttcaagagaacttgaagattggatcttgtgtgattgcttagcatagaagatt-a 125  Q
    |||||||||| || || |||||||||||||| ||||  ||||  ||||||||||  ||| ||||||||||| |||||||||||||||||||||||||| |    
T  23469447 ggattgcatgaaagcttgagattcgaagaccatgtggttgtccgatttcaagaggtcttaaagattggatcgtgtgtgattgcttagcatagaagattaa 23469546  T
Q  126 tgaatcgaaggaatctttgttatcatacatttgtaaacattttcatcatagtggaagcccgtgata 191  Q
    ||||||||| |||||||||| || ||||| ||||| ||||||||||||||| ||||| ||||||||    
T  23469547 tgaatcgaatgaatctttgtaattatacacttgtagacattttcatcatagcggaagaccgtgata 23469612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 47 - 193
Target Start/End: Original strand, 29798903 - 29799051
Alignment:
Q  47 attcgaagaccttgtgactgtctaatttcaagagaacttgaagattggatcttgtgtgattgcttagcatagaaga-ttatgaatcgaaggaatctttgt 145  Q
    ||||||| | ||||||  |||| |||||||||||  |||||||||||||||||||||||||| ||||||||||||| ||  |||| ||| ||||||||||    
T  29798903 attcgaacatcttgtgggtgtccaatttcaagaggtcttgaagattggatcttgtgtgattgtttagcatagaagatttgagaattgaatgaatctttgt 29799002  T
Q  146 tatcatacatttgtaaacatt-ttcatcatagtggaagcccgtgatata 193  Q
     || ||||||||||  ||||| || ||||||||||||| ||||||||||    
T  29799003 aattatacatttgtctacattattaatcatagtggaagaccgtgatata 29799051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 143
Target Start/End: Complemental strand, 17502494 - 17502377
Alignment:
Q  29 attgcatgcaaactcgagattcgaagaccttgtg-actgtctaatttcaagagaacttgaagattggat--cttgtgtgattgcttagcatagaagatta 125  Q
    ||||||||||| || ||| ||| |||||||| || | |||  |||||||||||| |||||||||| |||  | |||||||||||| ||||| ||| |||     
T  17502494 attgcatgcaagcttgaggttcaaagaccttatggattgttcaatttcaagagagcttgaagattagattccatgtgtgattgctaagcattgaatattg 17502395  T
Q  126 tgaatcgaaggaatcttt 143  Q
     |||||||||||||||||    
T  17502394 agaatcgaaggaatcttt 17502377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 170
Target Start/End: Original strand, 13312867 - 13312973
Alignment:
Q  65 tgtctaatttcaagagaacttgaagattggat--cttgtgtgattgcttagcatagaagattatgaatcgaaggaatctttgttatcatacatttgtaaa 162  Q
    |||| |||||||||||| ||||||||||  ||   |||||||||| ||||||||| | ||||| ||||| |||||   ||||| |||||||| |||||||    
T  13312867 tgtccaatttcaagagagcttgaagattatattctttgtgtgatttcttagcata-atgattaggaatcaaaggagagtttgtaatcatacacttgtaaa 13312965  T
Q  163 cattttca 170  Q
    ||||||||    
T  13312966 cattttca 13312973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 183
Target Start/End: Complemental strand, 23909872 - 23909708
Alignment:
Q  21 ttcaagggattgcatgcaaactcgagattcgaagaccttgtgactgtctaatttcaagagaacttgaagattggatcttgtgtgattgcttagcatagaa 120  Q
    ||||||||||||||||||| || ||||||| |||| | ||||  |||| ||||| |||||  ||||||||||| ||||||||||||||||||||||||||    
T  23909872 ttcaagggattgcatgcaagcttgagattcaaagatcatgtggttgtccaattttaagaggtcttgaagattgaatcttgtgtgattgcttagcatagaa 23909773  T
Q  121 gattatgaatcgaaggaatctttgttatcatacatttgtaaacattttc--atcatagtggaagc 183  Q
    ||||  ||||| ||||||||||||| ||||| |||||||||| | ||||  ||||||||||||||    
T  23909772 gattgagaatccaaggaatctttgtaatcatgcatttgtaaaaaatttcctatcatagtggaagc 23909708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 27 - 162
Target Start/End: Complemental strand, 29633988 - 29633850
Alignment:
Q  27 ggattgcatgcaaactcgagattcgaagaccttgtgact-gtctaatttcaagagaacttgaagattggatct--tgtgtgattgcttagcatagaagat 123  Q
    ||||||||||||| ||  ||||||||||||||||||  | ||| ||||||||||| | ||||||||||||| |  | ||||||||||||||||| || ||    
T  29633988 ggattgcatgcaatcttaagattcgaagaccttgtggatagtccaatttcaagagtatttgaagattggatttgttatgtgattgcttagcataaaatat 29633889  T
Q  124 tatgaatcgaaggaatctttgttatcatacatttgtaaa 162  Q
    | ||||||||| |||||||||| |||| || ||||||||    
T  29633888 tgtgaatcgaatgaatctttgtaatcacacttttgtaaa 29633850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 173
Target Start/End: Original strand, 17713726 - 17713873
Alignment:
Q  22 tcaagggattgcatgcaaactcgagattcgaagaccttgtgactgtctaatttcaagagaacttgaagattggatcttgtgtgattgcttagcatagaag 121  Q
    |||| |||||||||||||||| ||||||| ||||||| ||| |||    ||||||||||| ||| |||||||||| | ||||  ||| ||| ||||||||    
T  17713726 tcaaaggattgcatgcaaacttgagattcaaagacctcgtggctg----atttcaagagaccttaaagattggatatagtgtacttgattaacatagaag 17713821  T
Q  122 attatgaatcgaaggaatctttgttatcatacatttgtaaacattttcatca 173  Q
    |||  ||||| ||||| ||||||| || ||||| ||||||||||||| ||||    
T  17713822 attgggaatcaaaggagtctttgtaattatacacttgtaaacattttaatca 17713873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 182
Target Start/End: Complemental strand, 16510286 - 16510228
Alignment:
Q  127 gaatcgaaggaatctttgttatcatacatttgtaaacatttt---catcatagtggaag 182  Q
    |||| |||||||||||||| |||||||| ||||||| |||||   ||||||||||||||    
T  16510286 gaattgaaggaatctttgtaatcatacacttgtaaatattttcaacatcatagtggaag 16510228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 260
Target Start/End: Original strand, 22337258 - 22337497
Alignment:
Q  21 ttcaagggattgcatgcaaactcgagattcgaagaccttgtgactgtctaatttcaagagaacttgaagattggatcttgtgtgattgcttagcatagaa 120  Q
    |||||||||||||||| || || ||||||||||||||||||| ||||  ||||||| ||| ||||||||||||||||||  || ||||||||||||| ||    
T  22337258 ttcaagggattgcatggaagcttgagattcgaagaccttgtggctgttcaatttcatgaggacttgaagattggatctttagtaattgcttagcataaaa 22337357  T
Q  121 gatta-tgaatcgaaggaatctttgttatcatacatttgtaaacattttcatcatagtggaagcccgtgatataagcgnnnnnnnatcacgaagagagga 219  Q
    ||| |  ||||| ||||||||||| | |||||||| |||||||||||||||| | |  ||||| |||||||| |||         |||||||||||||||    
T  22337358 gatgagggaatcaaaggaatctttataatcatacacttgtaaacattttcatgacaaaggaagaccgtgata-aagactttttctatcacgaagagagga 22337456  T
Q  220 tgtacccctagtgaggtcgaaaagggaaaacctctataaat 260  Q
      |||||||||| ||  | |||||||||||||| |||||||    
T  22337457 catacccctagtaagaacaaaaagggaaaacctttataaat 22337497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 22 - 187
Target Start/End: Complemental strand, 17795611 - 17795446
Alignment:
Q  22 tcaagggattgcatgcaaactcgagattcgaagaccttgtgactgtctaatttcaagagaacttgaagattggatcttgtgtgattgcttagcatagaag 121  Q
    |||| |||| |||||||| ||  ||||| ||||||||||||  ||||  ||||||||||   |||||| ||||| || ||||   ||||| ||||| |||    
T  17795611 tcaaaggatcgcatgcaagctatagatttgaagaccttgtggttgtccgatttcaagaggtattgaaggttggacctagtgtagctgcttggcataaaag 17795512  T
Q  122 attatgaatcgaaggaatctttgttatcatacatttgtaaacattttcatcatagtggaagcccgt 187  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  17795511 attatgaatcgaaggaatctttgtaatcatacacttgtaaacattttcatcatagtggaagcccgt 17795446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 65 - 260
Target Start/End: Original strand, 22724549 - 22724745
Alignment:
Q  65 tgtctaatttcaagagaacttgaagattggatcttgtgtgattgcttagcatagaagatta-tgaatcgaaggaatctttgttatcatacatttgtaaac 163  Q
    |||| ||||||| |||  ||||||||||||||||||||||||| ||||||||| |||||||  ||||||||||||||||||| |||||||| ||||||||    
T  22724549 tgtccaatttcatgaggtcttgaagattggatcttgtgtgattccttagcatataagattagggaatcgaaggaatctttgtaatcatacacttgtaaac 22724648  T
Q  164 a-ttttcatcatagtggaagcccgtgatataagcgnnnnnnnatcacgaagagaggatgtacccctagtgaggtcgaaaagggaaaacctctataaat 260  Q
    | |||| |||| |||||||| ||||||||  ||         |||| || ||||||||||||||||||||||| |||||| || ||||||||||||||    
T  22724649 attttttatcagagtggaagaccgtgata-gagacattttatatcaagatgagaggatgtacccctagtgaggacgaaaatggcaaacctctataaat 22724745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 171
Target Start/End: Original strand, 22266986 - 22267137
Alignment:
Q  21 ttcaagggattgcatgcaaactcgagattcgaagaccttgtgactgtctaatttcaagagaacttgaagattggatcttgtgtgattgcttagcatagaa 120  Q
    |||||||||||||||| || || ||||||||||||||||||||||||  | ||||||||| ||||||||||||||||||  || |||||||| |||| ||    
T  22266986 ttcaagggattgcatggaagcttgagattcgaagaccttgtgactgttcagtttcaagaggacttgaagattggatctttagtaattgcttaacataaaa 22267085  T
Q  121 gatta-tgaatcgaaggaatctttgttatcatacatttgtaaacattttcat 171  Q
    ||| |  ||||| ||||||||||| | |||||||| ||| ||||||||||||    
T  22267086 gatgagggaatcaaaggaatctttataatcatacacttgaaaacattttcat 22267137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 23143265 - 23143161
Alignment:
Q  21 ttcaagggattgcatgcaaactcgagattcgaagaccttgtgactgtctaatttcaagagaacttgaagattggatcttgtgtgattgcttagcatagaa 120  Q
    |||||||||||||||| ||||| ||| ||||||||| | | | || || ||||||||||| |||||||||||||   | ||||| |||||||| || |||    
T  23143265 ttcaagggattgcatggaaacttgagtttcgaagacttagaggctctccaatttcaagaggacttgaagattggtggtagtgtggttgcttaggattgaa 23143166  T
Q  121 gatta 125  Q
    |||||    
T  23143165 gatta 23143161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 13256343 - 13256282
Alignment:
Q  84 ttgaagattggatcttgtgtgattgcttagcatagaagattatgaatcgaaggaatctttgt 145  Q
    ||||||||||||||||||||||||||||| ||| ||||||   | || ||||||||||||||    
T  13256343 ttgaagattggatcttgtgtgattgcttaacattgaagatatggtattgaaggaatctttgt 13256282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 21 - 260
Target Start/End: Original strand, 64147 - 64385
Alignment:
Q  21 ttcaagggattgcatgcaaactcgagattcgaagaccttgtgactgtctaatttcaagagaacttgaagattggatcttgtgtgattgcttagcatagaa 120  Q
    ||||| || |||||||||| || ||||||||||||||||||| ||||| || || |||||  ||||| |||| | |||||||||| | ||||| ||||||    
T  64147 ttcaacgggttgcatgcaagcttgagattcgaagaccttgtggctgtccaaatttaagaggccttgaggatttgttcttgtgtgaattcttagtatagaa 64246  T
Q  121 gattatgaatcgaaggaatctttgttatcatacatttgtaaacattttcatcatagtggaagcccgtgatataagcgnnnnnnnatcacgaagagaggat 220  Q
    ||||  || || ||||||||||||| |||||||| |||||||||||||||||||||| |||||| |   || || ||       |||||||||||| |||    
T  64247 gattgagattcaaaggaatctttgtaatcatacacttgtaaacattttcatcatagtcgaagccagctgtagaaacg-ttttctatcacgaagagatgat 64345  T
Q  221 gtacccctagtgaggtcgaaaagggaaaacctctataaat 260  Q
     ||||||||| |||| |||||||||  |||||||||||||    
T  64346 atacccctagcgaggacgaaaagggggaacctctataaat 64385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 21 - 260
Target Start/End: Complemental strand, 66220 - 65982
Alignment:
Q  21 ttcaagggattgcatgcaaactcgagattcgaagaccttgtgactgtctaatttcaagagaacttgaagattggatcttgtgtgattgcttagcatagaa 120  Q
    ||||| || |||||||||| || ||||||||||||||||||| ||||| || || |||||  ||||| |||| | |||||||||| | ||||| ||||||    
T  66220 ttcaacgggttgcatgcaagcttgagattcgaagaccttgtggctgtccaaatttaagaggccttgaggatttgttcttgtgtgaattcttagtatagaa 66121  T
Q  121 gattatgaatcgaaggaatctttgttatcatacatttgtaaacattttcatcatagtggaagcccgtgatataagcgnnnnnnnatcacgaagagaggat 220  Q
    ||||  || || ||||||||||||| |||||||| |||||||||||||||||||||| |||||| |   || || ||       |||||||||||| |||    
T  66120 gattgagattcaaaggaatctttgtaatcatacacttgtaaacattttcatcatagtcgaagccagctgtagaaacg-ttttctatcacgaagagatgat 66022  T
Q  221 gtacccctagtgaggtcgaaaagggaaaacctctataaat 260  Q
     ||||||||| |||| |||||||||  |||||||||||||    
T  66021 atacccctagcgaggacgaaaagggggaacctctataaat 65982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 86 - 183
Target Start/End: Original strand, 4007067 - 4007164
Alignment:
Q  86 gaagattggatcttgtgtgattgcttagcatagaagattatgaatcgaaggaatctttgttatcatacatttgtaaacattttcatcatagtggaagc 183  Q
    ||||||||||||||||||||||| ||||||||||||||||  ||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  4007067 gaagattggatcttgtgtgattgtttagcatagaagattagaaattgaaggaatctttgtaatcatacacttgtaaacattttcatcatagtggaagc 4007164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 86 - 183
Target Start/End: Original strand, 4012459 - 4012556
Alignment:
Q  86 gaagattggatcttgtgtgattgcttagcatagaagattatgaatcgaaggaatctttgttatcatacatttgtaaacattttcatcatagtggaagc 183  Q
    ||||||||||||||||||||||| ||||||||||||||||  ||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  4012459 gaagattggatcttgtgtgattgtttagcatagaagattagaaattgaaggaatctttgtaatcatacacttgtaaacattttcatcatagtggaagc 4012556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 168
Target Start/End: Complemental strand, 14616491 - 14616345
Alignment:
Q  22 tcaagggattgcatgcaaactcgagattcgaagaccttgtgactgtctaatttcaagagaacttgaagattggatcttgtgtgattgcttagcatagaag 121  Q
    |||| |||||| ||||||||| ||||||| ||||||||||| |||||| ||||||||||| ||| |||||| ||| |  |||||||| ||| ||||||||    
T  14616491 tcaaaggattgtatgcaaacttgagattcaaagaccttgtggctgtctgatttcaagagagcttaaagattagatatattgtgattgattaacatagaag 14616392  T
Q  122 attatgaatcgaaggaatctttgttatcatacatttgtaaacatttt 168  Q
    |||  ||||| ||||| ||||||| || ||||| |||||||||||||    
T  14616391 attgggaatcaaaggagtctttgtaattatacacttgtaaacatttt 14616345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 22 - 175
Target Start/End: Complemental strand, 14616161 - 14616008
Alignment:
Q  22 tcaagggattgcatgcaaactcgagattcgaagaccttgtgactgtctaatttcaagagaacttgaagattggatcttgtgtgattgcttagcatagaag 121  Q
    |||| |||||||||||||||| ||||||| ||||||| ||| |||||| ||||||||||| ||| |||||||||| |  |||||||| ||| ||||||||    
T  14616161 tcaaaggattgcatgcaaacttgagattcaaagacctcgtggctgtctgatttcaagagagcttaaagattggatatattgtgattgattaacatagaag 14616062  T
Q  122 attatgaatcgaaggaatctttgttatcatacatttgtaaacattttcatcata 175  Q
    |||  ||||| ||||| ||| ||| || ||||| || |||||||||| ||||||    
T  14616061 attgggaatcaaaggagtctatgtaattatacacttataaacattttaatcata 14616008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 33 - 162
Target Start/End: Original strand, 16030904 - 16031037
Alignment:
Q  33 catgcaaactcgagattcgaagaccttgtg-actgtctaatttcaagagaacttgaagattggatcttgt---gtgattgcttagcatagaagattatga 128  Q
    |||||||||| |||||| |||||||||||| | | || ||||| ||||||  ||||||||||||| ||||   |||||| |||||||||||||||||  |    
T  16030904 catgcaaacttgagatttgaagaccttgtggattatccaattttaagagagtttgaagattggattttgttgtgtgatttcttagcatagaagattagaa 16031003  T
Q  129 atcgaaggaatctttgttatcatacatttgtaaa 162  Q
    ||| ||||||||||||| |||||||| |||||||    
T  16031004 atcaaaggaatctttgtaatcatacacttgtaaa 16031037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 191
Target Start/End: Original strand, 8835298 - 8835459
Alignment:
Q  29 attgcatgcaaactcgagattcgaagaccttgtgactgtctaatttcaagagaacttgaagattggatcttgtgtgattgcttagcatagaagatt-atg 127  Q
    |||||||| || || ||||||  |||||||| |  || || ||||||||||   |||||||||||||||||||||||||||||| |||  || ||| | |    
T  8835298 attgcatggaagcttgagatttaaagaccttatagctttcaaatttcaagaactcttgaagattggatcttgtgtgattgcttatcatgaaatattaagg 8835397  T
Q  128 aatcgaaggaatctttgttatcatacatttgtaaacattttcatcatagtggaagcccgtgata 191  Q
    |||| || |||||||||| | |||||| |||||||||  ||||||||| || ||| ||||||||    
T  8835398 aatcaaatgaatctttgtaaccatacacttgtaaaca--ttcatcataatgaaagaccgtgata 8835459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 152
Target Start/End: Complemental strand, 11733188 - 11733134
Alignment:
Q  98 ttgtgtgattgcttagcatagaagattatgaatcgaaggaatctttgttatcata 152  Q
    ||||| |||||||||||||||||||||| |||||||| |||||||||| ||||||    
T  11733188 ttgtgggattgcttagcatagaagattaggaatcgaaagaatctttgtcatcata 11733134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 15080328 - 15080276
Alignment:
Q  208 acgaagagaggatgtacccctagtgaggtcgaaaagggaaaacctctataaat 260  Q
    |||||||||||||||||| ||| |||||  |||||||||||||||||||||||    
T  15080328 acgaagagaggatgtacctctaatgaggaggaaaagggaaaacctctataaat 15080276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 10339960 - 10340012
Alignment:
Q  208 acgaagagaggatgtacccctagtgaggtcgaaaagggaaaacctctataaat 260  Q
    ||||||||||||||||||||||| |||| |||||| || |||| |||||||||    
T  10339960 acgaagagaggatgtacccctagagaggacgaaaaagggaaacttctataaat 10340012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 15052947 - 15052878
Alignment:
Q  27 ggattgcatgcaaactcgagattcgaagaccttgtgactgtctaatttcaagagaacttgaagattggat 96  Q
    |||||||| ||  ||| ||| ||||||||||||| ||   ||||||||||||||| ||||||||||||||    
T  15052947 ggattgcaagctgacttgaggttcgaagaccttgggatcatctaatttcaagagagcttgaagattggat 15052878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 22 - 175
Target Start/End: Complemental strand, 53083 - 52930
Alignment:
Q  22 tcaagggattgcatgcaaactcgagattcgaagaccttgtgactgtctaatttcaagagaacttgaagattggatcttgtgtgattgcttagcatagaag 121  Q
    |||| ||||||||||||| ||  ||||||||||||||||||  |||| |||||| ||||    |||||||||||| |||||||||| ||||||||| |||    
T  53083 tcaaaggattgcatgcaagcttaagattcgaagaccttgtggttgtccaatttccagaggttgtgaagattggatattgtgtgatttcttagcataaaag 52984  T
Q  122 attatgaatcgaaggaatctttgttatcatacatttgtaaacattttcatcata 175  Q
    ||||  |||| | ||||| ||| | |||||||| ||||||||||||||||||||    
T  52983 attagtaatcaagggaatttttataatcatacacttgtaaacattttcatcata 52930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 52895 - 52846
Alignment:
Q  211 aagagaggatgtacccctagtgaggtcgaaaagggaaaacctctataaat 260  Q
    ||||||||| ||||||||||||| | ||||| ||| ||||||||||||||    
T  52895 aagagaggacgtacccctagtgacgacgaaatggggaaacctctataaat 52846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 14753401 - 14753229
Alignment:
Q  21 ttcaagggattgcatgcaaactcgagattcgaagaccttgtgactgtctaatttcaagagaacttgaagattggatcttgtgtgattgcttagcatagaa 120  Q
    ||||| |||||||||| || || ||  |||||||||||||||  |||| ||| |||||||  ||||||||||| |||||||||||||||||| || | ||    
T  14753401 ttcaaaggattgcatggaagcttgatgttcgaagaccttgtgggtgtccaatatcaagaggtcttgaagattgaatcttgtgtgattgcttatcaaataa 14753302  T
Q  121 gatt-atgaatcgaaggaatctttgttatcatacatttgtaaaca-ttttcatcatagtggaagcccgtgata 191  Q
    ||||   ||||| || |||| ||||| |||||| | ||||||||| |||||||||||||||||| ||||||||    
T  14753301 gattggagaatcaaatgaatttttgtaatcatagacttgtaaacatttttcatcatagtggaagaccgtgata 14753229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 65 - 191
Target Start/End: Complemental strand, 21487244 - 21487124
Alignment:
Q  65 tgtctaatttcaagagaacttgaagattggatcttgtgtgattgcttagcatagaagattatgaatcgaaggaatctttgttatcatacatttgtaaaca 164  Q
    |||| |||||||||||  ||| ||||||||||||| ||||||| ||||||||||||       |||| ||||||||||||| |||||||| |||||||||    
T  21487244 tgtccaatttcaagaggtctttaagattggatcttctgtgatttcttagcatagaa-------aatccaaggaatctttgtaatcatacacttgtaaaca 21487152  T
Q  165 -ttttcatcatagtggaagcccgtgata 191  Q
     ||||||||||||| |||| || |||||    
T  21487151 tttttcatcatagtagaagaccatgata 21487124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 183
Target Start/End: Original strand, 23330586 - 23330679
Alignment:
Q  94 gatcttgtgtgattgcttagcatagaagattatgaatcgaagga--atctttgttatcatacatttgtaaaca--ttttcatcatagtggaagc 183  Q
    ||||||||||||||  |||||||||||||||| |||||||||||   | ||||| |||||||| |||||||||  |||| ||||||||||||||    
T  23330586 gatcttgtgtgattatttagcatagaagattaggaatcgaaggattttttttgtaatcatacacttgtaaacatttttttatcatagtggaagc 23330679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 27 - 166
Target Start/End: Complemental strand, 17052245 - 17052103
Alignment:
Q  27 ggattgcatgcaaactcgagattcgaagaccttgtg-actgtctaatttcaagagaacttgaagattggatc--ttgtgtgattgcttagcatagaagat 123  Q
    ||||| |||||||  | |||||| |||||||||||| | ||| ||||||||||||| ||||||||||| ||   |||| |||||||||||||||||||||    
T  17052245 ggatttcatgcaagtttgagatttgaagaccttgtggattgtttaatttcaagagagcttgaagattgcattctttgtctgattgcttagcatagaagat 17052146  T
Q  124 tatgaatcgaaggaatctttgttatcatacatttgtaaacatt 166  Q
    || |||| ||||||| |||||| ||||||   |||||||||||    
T  17052145 taggaatagaaggaacctttgtaatcataatcttgtaaacatt 17052103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 22 - 166
Target Start/End: Original strand, 17061334 - 17061481
Alignment:
Q  22 tcaagggattgcatgcaaactcgagattcgaagaccttgt-gactgtctaatttcaagagaacttgaagattgga-tctt-gtgtgattgcttagcatag 118  Q
    |||| ||||||||||||| || |||||||||||||||| | || ||||| ||||||||||||||||||||| ||| |||| ||||||||| ||||| ||     
T  17061334 tcaaaggattgcatgcaagcttgagattcgaagaccttatggattgtctgatttcaagagaacttgaagatcggattcttagtgtgattgattagcgtat 17061433  T
Q  119 aagattatgaatcgaaggaatctttgttatcatacatttgtaaacatt 166  Q
    ||||||| |||||| |||| | ||||| ||| |||  |||||||||||    
T  17061434 aagattaggaatcgtaggattatttgtaatcttactcttgtaaacatt 17061481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 73 - 187
Target Start/End: Original strand, 18951928 - 18952043
Alignment:
Q  73 ttcaagagaactt-gaagattggatcttgtgtgattgcttagcatagaagattatgaatcgaaggaatctttgttatcatacatttgtaaacattttcat 171  Q
    |||||||| |||| ||||||| |||||||||||||| ||||||||||| ||||| |||||||| |||| ||||| || |||   ||||||||||||||||    
T  18951928 ttcaagaggacttagaagattagatcttgtgtgatttcttagcatagatgattaggaatcgaaagaatttttgtaattatatgcttgtaaacattttcat 18952027  T
Q  172 catagtggaagcccgt 187  Q
    |||||| ||| |||||    
T  18952028 catagtagaaacccgt 18952043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 41580962 - 41580890
Alignment:
Q  98 ttgtgtgattgcttagcatagaagattatgaatcgaaggaatctttgttatcatacatttgtaaacattttca 170  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||  || ||||||||||||| |||||||    
T  41580962 ttgtgtgattgcttagcataaaagattaggaatcgaaggaatctttgcaattatacatttgtaaatattttca 41580890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 107 - 185
Target Start/End: Complemental strand, 17051721 - 17051643
Alignment:
Q  107 tgcttagcatagaagattatgaatcgaaggaatctttgttatcatacatttgtaaacattttcatcatagtggaagccc 185  Q
    ||||||| ||| ||||||| ||||||||||||||||| | |||||||  ||||||||||||||| ||||||||||||||    
T  17051721 tgcttaggatataagattaggaatcgaaggaatctttataatcatacccttgtaaacattttcaacatagtggaagccc 17051643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 109 - 191
Target Start/End: Original strand, 16884328 - 16884411
Alignment:
Q  109 cttagcatagaagattatg-aatcgaaggaatctttgttatcatacatttgtaaacattttcatcatagtggaagcccgtgata 191  Q
    ||||||||| ||||||| | |||||||  || |||||| || ||||| ||||||||||||||||||||||||||||||||||||    
T  16884328 cttagcatataagattagggaatcgaataaaactttgtaattatacacttgtaaacattttcatcatagtggaagcccgtgata 16884411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 17107204 - 17107142
Alignment:
Q  71 atttcaagagaacttgaagattggatc--ttgtgtgattgcttagcatagaagattatgaatc 131  Q
    |||| |||||| ||||||||||||||   |||||||||||||||||||||||||||| |||||    
T  17107204 attttaagagagcttgaagattggattctttgtgtgattgcttagcatagaagattaggaatc 17107142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 17061526 - 17061576
Alignment:
Q  210 gaagagaggatgtacccctagtgaggtcgaaaagggaaaacctctataaat 260  Q
    |||||||||||||||||||| ||||| ||||||||| |||| |||||||||    
T  17061526 gaagagaggatgtacccctattgaggacgaaaaggggaaacatctataaat 17061576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 14981496 - 14981566
Alignment:
Q  22 tcaagggattgcatgcaaactcgagattcgaagaccttgtgactgtctaatttcaagagaacttgaagatt 92  Q
    ||||||||||||||| || || |||| |||||||||| | | || || ||||||||||| |||||||||||    
T  14981496 tcaagggattgcatggaagcttgagaatcgaagacctagaggctctccaatttcaagaggacttgaagatt 14981566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 70 - 162
Target Start/End: Complemental strand, 16726 - 16634
Alignment:
Q  70 aatttcaagagaacttgaagattggatcttgtgtgattgcttagcatagaagatta-tgaatcgaaggaatctttgttatcatacatttgtaaa 162  Q
    ||||| ||||| ||||||||||||||||||||||||||| |||||||| |||||||  | |||||| |||||||||  ||||||| ||||||||    
T  16726 aatttaaagaggacttgaagattggatcttgtgtgattgattagcataaaagattaggggatcgaatgaatctttgcaatcatac-tttgtaaa 16634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University