View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14798_high_22 (Length: 252)
Name: NF14798_high_22
Description: NF14798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14798_high_22 |
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| [»] chr5 (3 HSPs) |
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| [»] scaffold0004 (1 HSPs) |
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| [»] scaffold0123 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 10 - 252
Target Start/End: Original strand, 5399818 - 5400064
Alignment:
| Q |
10 |
gtgatatgaaacgttcctgaaaaaagagatacatagtaagctatatatataccatcaatcacagattcggatacggacacaagacacgacatatatatgt |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
5399818 |
gtgatatgaaacgttcctgaaaaaagagatacatagtaagctatatatataccatcaatcacaaactcggatacggacacaagacacgacatatatatgt |
5399917 |
T |
|
| Q |
110 |
ctgacatcaatgataatttaaaaaatgacataattcaatgtaactatatgtgtcggtatcg----tatatatgtatatgatactgagacacatataatcc |
205 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| ||||||| || |||||| ||||||| |||||||||||||||||||| ||||| |
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| T |
5399918 |
ctgacatcaataataatttaaaaaatgacataattcaatgtaattatatgtttcagtatcgtgtatatatatatatatgatactgagacacatctaatct |
5400017 |
T |
|
| Q |
206 |
gaagagtacgtgtgtttattaggtatatggacatgtctattaatgat |
252 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5400018 |
gaagagtacgtgtgtttattaggtatatggacatgtcgattaatgat |
5400064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 162
Target Start/End: Complemental strand, 38749604 - 38749571
Alignment:
| Q |
129 |
aaaaaatgacataattcaatgtaactatatgtgt |
162 |
Q |
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|||||||||||||||||||||||| ||||||||| |
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| T |
38749604 |
aaaaaatgacataattcaatgtaattatatgtgt |
38749571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 166
Target Start/End: Complemental strand, 14818351 - 14818307
Alignment:
| Q |
122 |
ataatttaaaaaatgacataattcaatgtaactatatgtgtcggt |
166 |
Q |
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||||||| | ||||||||||||||||||||| |||||||||||| |
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|
| T |
14818351 |
ataatttgagaaatgacataattcaatgtaaacatatgtgtcggt |
14818307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 163
Target Start/End: Original strand, 101015 - 101052
Alignment:
| Q |
126 |
tttaaaaaatgacataattcaatgtaactatatgtgtc |
163 |
Q |
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||||||||||||||||||||||||||| |||||||||| |
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| T |
101015 |
tttaaaaaatgacataattcaatgtaattatatgtgtc |
101052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 162
Target Start/End: Original strand, 17168912 - 17168945
Alignment:
| Q |
129 |
aaaaaatgacataattcaatgtaactatatgtgt |
162 |
Q |
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|
|||||||||||||||||||||||||||||||||| |
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|
| T |
17168912 |
aaaaaatgacataattcaatgtaactatatgtgt |
17168945 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 152
Target Start/End: Complemental strand, 13815098 - 13815057
Alignment:
| Q |
111 |
tgacatcaatgataatttaaaaaatgacataattcaatgtaa |
152 |
Q |
| |
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||||| |||| ||||||||||||||||||||||| ||||||| |
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| T |
13815098 |
tgacaccaataataatttaaaaaatgacataattgaatgtaa |
13815057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 9617454 - 9617494
Alignment:
| Q |
131 |
aaaatgacataattcaatgtaactatatgtgtcggtatcgt |
171 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||| |||| |
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|
| T |
9617454 |
aaaatcacataattcaatgtaattatatgtgtcggtgtcgt |
9617494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 19930980 - 19930940
Alignment:
| Q |
131 |
aaaatgacataattcaatgtaactatatgtgtcggtatcgt |
171 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||| |
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|
| T |
19930980 |
aaaatgacataattcaatgtaattatatgtgtcgatatcgt |
19930940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 30606105 - 30606069
Alignment:
| Q |
129 |
aaaaaatgacataattcaatgtaactatatgtgtcgg |
165 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |
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|
| T |
30606105 |
aaaaaatgacataattcaatgtaaccatatgtgtcgg |
30606069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 166
Target Start/End: Complemental strand, 32915654 - 32915610
Alignment:
| Q |
122 |
ataatttaaaaaatgacataattcaatgtaactatatgtgtcggt |
166 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||| ||||| |
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| T |
32915654 |
ataatttaaaaaatcacataattcaatgtaattatatgtttcggt |
32915610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 166
Target Start/End: Complemental strand, 5555180 - 5555136
Alignment:
| Q |
122 |
ataatttaaaaaatgacataattcaatgtaactatatgtgtcggt |
166 |
Q |
| |
|
|||||||||||||| | |||||| ||||||| ||||||||||||| |
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|
| T |
5555180 |
ataatttaaaaaataagataatttaatgtaattatatgtgtcggt |
5555136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 25390930 - 25390890
Alignment:
| Q |
126 |
tttaaaaaatgacataattcaatgtaactatatgtgtcggt |
166 |
Q |
| |
|
|||| |||||||||||||||||| |||| |||||||||||| |
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| T |
25390930 |
tttagaaaatgacataattcaatataaccatatgtgtcggt |
25390890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 169
Target Start/End: Original strand, 14692470 - 14692517
Alignment:
| Q |
122 |
ataatttaaaaaatgacataattcaatgtaactatatgtgtcggtatc |
169 |
Q |
| |
|
||||||| | ||||||||||||||| |||||||||| ||||||||||| |
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| T |
14692470 |
ataatttgagaaatgacataattcagtgtaactataggtgtcggtatc |
14692517 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 18964192 - 18964232
Alignment:
| Q |
126 |
tttaaaaaatgacataattcaatgtaactatatgtgtcggt |
166 |
Q |
| |
|
|||| ||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
18964192 |
tttagaaaatcacataattcaatgtaattatatgtgtcggt |
18964232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 41319369 - 41319316
Alignment:
| Q |
112 |
gacatcaatgataattt-aaaaaatgacataattcaatgtaactatatgtgtcg |
164 |
Q |
| |
|
|||| |||| ||||||| |||||||||||||||||||||||| | ||||||||| |
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|
| T |
41319369 |
gacaccaataataatttgaaaaaatgacataattcaatgtaattgtatgtgtcg |
41319316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 35222953 - 35222993
Alignment:
| Q |
126 |
tttaaaaaatgacataattcaatgtaactatatgtgtcggt |
166 |
Q |
| |
|
|||| ||||| |||||||||||||||| ||||||||||||| |
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|
| T |
35222953 |
tttagaaaatcacataattcaatgtaattatatgtgtcggt |
35222993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0123 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0123
Description:
Target: scaffold0123; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 44564 - 44524
Alignment:
| Q |
131 |
aaaatgacataattcaatgtaactatatgtgtcggtatcgt |
171 |
Q |
| |
|
||||| |||||||||| ||||| |||||||||||||||||| |
|
|
| T |
44564 |
aaaatcacataattcagtgtaattatatgtgtcggtatcgt |
44524 |
T |
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