View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14798_high_4 (Length: 515)
Name: NF14798_high_4
Description: NF14798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14798_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 468; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 17 - 500
Target Start/End: Original strand, 3219019 - 3219502
Alignment:
| Q |
17 |
gaagaaaaggcaaatagaatataccatggtctaatgcgcataacatctgttctgggcggcgtagatggtaagcggtttaagtgttcaataactgtatgca |
116 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3219019 |
gaagaaaaggcaaatagaatataccatcgtctaatgcgcataacatctgttctgggcagcgtagatggtaagcggtttaagtgttcaataactgtatgca |
3219118 |
T |
|
| Q |
117 |
catgagaccaattctgacaaggttcaacaataatgagaaacaggactactgtagttcaaatcatgggaaaagtcaattttttgcaataatttaaacaaac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3219119 |
catgagaccaattctgacaaggttcaacaataatgagaaacaggactactgtagttcaaatcatgggaaaagtcaattttttgcaataatttaaacaaac |
3219218 |
T |
|
| Q |
217 |
aatgctaacctgcattgccattacatctgcatgatcaataataagaacctgcttaaaaacattcactttgtcaacttcatacaatatgatccaaatacac |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3219219 |
aatgctaacctgcattgccattacatctgcatgatcaataataagaacctgcttaaaaacattcactttgtcaacttcatacaatatgatccaaatacac |
3219318 |
T |
|
| Q |
317 |
agtatctacctacccagaaataaatataaagtatatagtataataaagtatgtataacaattaagagtgggacaatcacctcgatggacgaaagaaaatc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3219319 |
agtatctacctacccagaaataaatataaagtatatagtataataaagtatgtataacaattaagagtgggacaatcacctctatggacgaaagaaaatc |
3219418 |
T |
|
| Q |
417 |
tacatccttttccttattgcattcagtctcttcaattttctatatccaaaccaaactaatgttagcttatataagcaatacatt |
500 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3219419 |
tacatctttttccttattgcattcagtctcttcaattttctatatccaaaccaaactaatgttagcttatataagcaatacatt |
3219502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 17 - 499
Target Start/End: Complemental strand, 15986661 - 15986187
Alignment:
| Q |
17 |
gaagaaaaggcaaatagaatataccatggtctaatgcgcataacatctgttctgggcggcgtagatggtaagcggtttaagtgttcaataactgtatgca |
116 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||| |
|
|
| T |
15986661 |
gaagaaaagccaaatagaatataccatggtctaatgcgcataacatctgttctgggcggcgtagatggtaagcggttcaagtgttcaataactggacgca |
15986562 |
T |
|
| Q |
117 |
catgagaccaattctgacaaggttcaacaataatgagaaacaggactactgtagttcaaatcatgggaaaagtcaattttttgcaataatttaaacaaac |
216 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
15986561 |
catgagaccaattctgacaagtttcaacaataatgagaaactgg-ctactgtagttcaaatcatgggtaaagtcaattttctgcaataatttaaacaaag |
15986463 |
T |
|
| Q |
217 |
aatgctaacctgcattgccattacatctgcatgatcaataataagaacctgcttaaaaacattcactttgtcaacttcatacaatatgatccaaatacac |
316 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||| ||| ||||||||||||||||| |
|
|
| T |
15986462 |
aatgctaacctgcattgtcattacatctgcatgatcaataataagaacctgcttcaaaacatacactctgtcaacttcgtacgatatgatccaaatacac |
15986363 |
T |
|
| Q |
317 |
agtatctacctacccagaaataaatataaagtatatagtataataaagtatgtataacaattaagagtgggacaatcacctcgatggacgaaagaaaatc |
416 |
Q |
| |
|
|| |||| |||| ||||| ||||||||||||||||||||||| ||||||||||||||||||| || |||||||||| ||||||||||||||||| |
|
|
| T |
15986362 |
agcatctgcctatccagatataaatataaagtatatagtata-------atgtataacaattaagagtagggcaatcacctctatggacgaaagaaaatc |
15986270 |
T |
|
| Q |
417 |
tacatccttttccttattgcattcagtctcttcaattttctatatccaaaccaaactaatgttagcttatataagcaatacat |
499 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
15986269 |
tacatctttttccttattgatttcagtctcttcaattttctatatccaaaccaaactgatgttagcttatacaagcaatacat |
15986187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 89 - 292
Target Start/End: Original strand, 23727396 - 23727603
Alignment:
| Q |
89 |
cggtttaagtgttcaataactgtatgcacatgagaccaattctgacaaggttcaacaataatgagaaacaggactact---gtagttcaaatcatgggaa |
185 |
Q |
| |
|
|||||||| |||| ||||| |||| ||||||||||||| |||||||| |||||||||||||||||||| | | | || |||||||||||||| | |
|
|
| T |
23727396 |
cggtttaactgttgaataatggtattaacatgagaccaatcctgacaagtttcaacaataatgagaaacacaattcatagcgtcgttcaaatcatgggta |
23727495 |
T |
|
| Q |
186 |
aagtcaattttttgcaataatttaaacaaacaatgctaacctgcattgccattacatctgcatgatcaataataagaacctgcttaaaa-acattcactt |
284 |
Q |
| |
|
|||||||||| ||||||||||||||||| | ||| | |||||||||||| |||| |||||| ||||||||||| |||| ||| |||||| |||| |||| |
|
|
| T |
23727496 |
aagtcaatttgttgcaataatttaaacatataatacaaacctgcattgctattatatctgcgtgatcaataatgagaatctggttaaaagacatacactc |
23727595 |
T |
|
| Q |
285 |
tgtcaact |
292 |
Q |
| |
|
|||||||| |
|
|
| T |
23727596 |
tgtcaact |
23727603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University