View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14798_high_5 (Length: 485)
Name: NF14798_high_5
Description: NF14798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14798_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 403; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 16 - 466
Target Start/End: Original strand, 6813098 - 6813548
Alignment:
| Q |
16 |
atgaatatatagatgtttagacaaatgaaatgaacatatataagtttagtcaatgacactaaccaaagtattcactggatatggtagaatgaagaatagt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6813098 |
atgaatatatagatgtttagacaaatgaaatgaacatatataagtttagtcaatgacactaaccaaagtattcactggatatggtagaatgaagaatagt |
6813197 |
T |
|
| Q |
116 |
gtctccattgtttttgattgaaagtgagtcatcatctttgttctgctggcgaccatgaagacaaaagaatgcctctcttttgccatatacagctgccaag |
215 |
Q |
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||| ||||| ||||| |||||| ||| | ||||||||||| ||| || |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6813198 |
gtccccattattttttcttgaaactgaataatcatctttgtcctgatgacgactatgaagacaaaagaatgcctctcttttgccatatacagctgccaag |
6813297 |
T |
|
| Q |
216 |
aaaagaggagtttcgccttcgaaatttcgataggaaatgaggataggatctcttttagctatgttgttgcaaatttctacattcccaagctctgctgcaa |
315 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6813298 |
aaaagaggagtttcgccttcgaaatttcgacaggaaatgaggataggatctcttttagctatgttgttgcaaatttctacattcccaagctctgctgcaa |
6813397 |
T |
|
| Q |
316 |
catgaagaggagtatttccctttgagttttgcattcgtaggatgtcccaacacatgtctttgctgattttatctaacaaggttgtcacaaagagtgtttg |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6813398 |
catgaagaggagtatttccctttgagttttgcattcgtaggatgtcccaacacatgtctttgctgattttatctaacaaggttgtcacaaagagtgtttg |
6813497 |
T |
|
| Q |
416 |
cttcagatacacagcaatgtgtaacaatgtgtcttctacttttgtgatctt |
466 |
Q |
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| T |
6813498 |
cttcagatacacagcaatgtgtaacaatgtgtcttctacttttgtgatctt |
6813548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 16 - 468
Target Start/End: Original strand, 6819654 - 6820106
Alignment:
| Q |
16 |
atgaatatatagatgtttagacaaatgaaatgaacatatataagtttagtcaatgacactaaccaaagtattcactggatatggtagaatgaagaatagt |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6819654 |
atgaatatatagatgtttagacaaatgaaatgaacatatagaagtttagtcaatgacactaaccaaagtattcactggatatggtagaatgaagaatagt |
6819753 |
T |
|
| Q |
116 |
gtctccattgtttttgattgaaagtgagtcatcatctttgttctgctggcgaccatgaagacaaaagaatgcctctcttttgccatatacagctgccaag |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| || |||||||| |||| |||||||||||| |
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| T |
6819754 |
gtctccattgtttttgattgaaagtgagtcatcatctttgttctgttggtgaccatgaagacaaaagaaagcatctctttttccatgaacagctgccaag |
6819853 |
T |
|
| Q |
216 |
aaaagaggagtttcgccttcgaaatttcgataggaaatgaggataggatctcttttagctatgttgttgcaaatttctacattcccaagctctgctgcaa |
315 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
6819854 |
aaaagaggagtttcgccttcgaaatttcgatacgaaatgaggataggacatcttttagctatgttgttgcaaatgtctacattcccaagctctgcagcaa |
6819953 |
T |
|
| Q |
316 |
catgaagaggagtatttccctttgagttttgcattcgtaggatgtcccaacacatgtctttgctgattttatctaacaaggttgtcacaaagagtgtttg |
415 |
Q |
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||||||| || ||||||||||| ||||||||| ||| |||||||| | |||| ||||| || || ||||||||||||| |||||||||| |||||| |
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| T |
6819954 |
catgaaggggggtatttcccttcgagttttgcgttcttaggatgttcatgcacacgtcttggcatatgttatctaacaaggctgtcacaaagcatgtttg |
6820053 |
T |
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| Q |
416 |
cttcagatacacagcaatgtgtaacaatgtgtcttctacttttgtgatctttg |
468 |
Q |
| |
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||| |||||||||||||||||||| |||||||||| ||| ||||||||||| |
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|
| T |
6820054 |
gctcacatacacagcaatgtgtaacactgtgtcttctgcttctgtgatctttg |
6820106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 66 - 468
Target Start/End: Original strand, 6834180 - 6834582
Alignment:
| Q |
66 |
caatgacactaaccaaagtattcactggatatggtagaatgaagaatagtgtctccattgtttttgattgaaagtgagtcatcatctttgttctgctggc |
165 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
6834180 |
caatgacactaaccaaagtattcactggatatggtagaatgaagaatagtgtctccattgtttttgattgaaagtgagtcatcatctttgttctgttcgt |
6834279 |
T |
|
| Q |
166 |
gaccatgaagacaaaagaatgcctctcttttgccatatacagctgccaagaaaagaggagtttcgccttcgaaatttcgataggaaatgaggataggatc |
265 |
Q |
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||||||||||||||||||| || |||||||| |||| ||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||| |
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| T |
6834280 |
gaccatgaagacaaaagaaagcatctctttttccatgaacagctgccaagaaaagaggagtctcgccttcaaaatttcgatatgaaatgaggatgggatc |
6834379 |
T |
|
| Q |
266 |
tcttttagctatgttgttgcaaatttctacattcccaagctctgctgcaacatgaagaggagtatttccctttgagttttgcattcgtaggatgtcccaa |
365 |
Q |
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|||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
6834380 |
tcttctggctatattgttgcaaatttctacattcccaagctctgctgcaacatgaagaggagtatttccctttgagttttgcattcttaggatgttccgg |
6834479 |
T |
|
| Q |
366 |
cacatgtctttgctgattttatctaacaaggttgtcacaaagagtgtttgcttcagatacacagcaatgtgtaacaatgtgtcttctacttttgtgatct |
465 |
Q |
| |
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||||| |||| ||| || ||||||||||||||||||||||| | |||||| ||| || | ||||||||||||| ||||||||| |||||||||||| |
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| T |
6834480 |
cacatatcttggcttatgttatctaacaaggttgtcacaaaaattgtttggctcacgtatatggcaatgtgtaacaccgtgtcttctgcttttgtgatct |
6834579 |
T |
|
| Q |
466 |
ttg |
468 |
Q |
| |
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||| |
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|
| T |
6834580 |
ttg |
6834582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 103 - 180
Target Start/End: Original strand, 34778826 - 34778905
Alignment:
| Q |
103 |
aatgaagaatagtgtctccattgtttttg--attgaaagtgagtcatcatctttgttctgctggcgaccatgaagacaaa |
180 |
Q |
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|||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||| ||| ||||||||||||||| |
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| T |
34778826 |
aatgaagaatggtgtctccattgttttttttattgaaagtgaatcatcatctttattctgttggtgaccatgaagacaaa |
34778905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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