View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14798_low_11 (Length: 457)

Name: NF14798_low_11
Description: NF14798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14798_low_11
NF14798_low_11
[»] chr5 (2 HSPs)
chr5 (11-440)||(2326736-2327165)
chr5 (174-433)||(39571622-39571881)
[»] chr3 (2 HSPs)
chr3 (107-415)||(7256125-7256436)
chr3 (223-284)||(49388138-49388199)
[»] chr8 (7 HSPs)
chr8 (171-440)||(9841250-9841519)
chr8 (218-433)||(9846336-9846551)
chr8 (11-68)||(9841619-9841676)
chr8 (198-284)||(9902359-9902445)
chr8 (11-65)||(9860271-9860325)
chr8 (362-440)||(9902203-9902281)
chr8 (9-58)||(9902591-9902640)
[»] chr1 (4 HSPs)
chr1 (303-440)||(5054881-5055018)
chr1 (218-329)||(46445365-46445476)
chr1 (20-67)||(5054598-5054645)
chr1 (400-440)||(46445251-46445291)


Alignment Details
Target: chr5 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 11 - 440
Target Start/End: Original strand, 2326736 - 2327165
Alignment:
Q  11 atctacaaggaaaagcttgaattcggaagtgccaggaacatgtgctatagtacattgcatactaaatatcataggttgtcgagatatgggaaaatcagga 110  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2326736 atctacaaggaaaagcttgaattcggaagtgccaggaacccgtgctatagtacattgcatactaaatatcataggttgtcgagatatgggaaaatcagga 2326835  T
Q  111 atcctaagccaacacttgaggataggattcatgacaaaaatttgttcataaatattgcagagcagcaatataccattacaagtatcgattatatctccca 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2326836 atcctaagccaacacttgaggataggattcatgacaaaaatttgttcataaatattgcagaacagcaatataccattacaagtatcgattatatctccca 2326935  T
Q  211 ttattgaaggtattcctaaatcagtcctttcaaattggttgttcacataatctttaaattccaagaaataagaattgtccggttccatgcaattttcaac 310  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2326936 ttattgaaggtattcctaaatcagtcctttcaaattggtcgttcacataatctttaaattccaagaaataagaattgtccggttccatgcaattttcaac 2327035  T
Q  311 ataaagaccaagtttagaatgtgcatggcgttcgtatgcttcagcaaaatgggagctgccaatagtagcagcccacagtttgtttacataccttgcagag 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2327036 ataaagaccaagtttagaatgtgcatggcgttcgtatgcttcagcaaaatgggagctgccaatagtagcagcccacagtttgtttacataccttgcagag 2327135  T
Q  411 ttaagcaggcaattaagaggaacaaaagta 440  Q
    ||||||||||||||||||||||||||||||    
T  2327136 ttaagcaggcaattaagaggaacaaaagta 2327165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 433
Target Start/End: Complemental strand, 39571881 - 39571622
Alignment:
Q  174 agcaatataccattacaagtatcgattatatctcccattattgaaggtattcctaaatcagtcctttcaaattggttgttcacataatctttaaattcca 273  Q
    |||||||| |||| |||||||  ||||| ||| |||||| ||  |||| || | |||||| |||||||||||||  | |||| || ||||||||  ||||    
T  39571881 agcaatatgccatcacaagtactgattaaatcccccattgtttgaggtgtttccaaatcaatcctttcaaattgcctattcatatcatctttaatatcca 39571782  T
Q  274 agaaataagaattgtccggttccatgcaattttcaacataaagaccaagtttagaatgtgcatggcgttcgtatgcttcagcaaaatgggagctgccaat 373  Q
    ||||||||||| |      |  |||||  |||||||| |||| ||||||||||||| |  ||| ||||| |||  ||| |||||||| |||||||| |||    
T  39571781 agaaataagaactactttttgacatgcggttttcaacgtaaataccaagtttagaacgaccattgcgttggtacactttagcaaaatcggagctgcgaat 39571682  T
Q  374 agtagcagcccacagtttgtttacataccttgcagagttaagcaggcaattaagaggaac 433  Q
    |||||| |||||   ||||   ||||| |||| ||||||||  |||| ||||||||||||    
T  39571681 agtagccgcccaagatttgcaaacatatcttgtagagttaattaggctattaagaggaac 39571622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 107 - 415
Target Start/End: Complemental strand, 7256436 - 7256125
Alignment:
Q  107 aggaatcctaagccaacacttgaggataggattcatgacaaaaatttgttca-taaatattgcag--agcagcaatataccattacaagtatcgattata 203  Q
    |||||| |||||||||||||||||||| || |||| |||| ||||||||| | ||| | | | |   |||||||||||||||| ||||||| ||| || |    
T  7256436 aggaattctaagccaacacttgaggatggggttcacgacataaatttgtttagtaattctcgaaattagcagcaatataccataacaagtaccgactaca 7256337  T
Q  204 tctcccattattgaaggtattcctaaatcagtcctttcaaattggttgttcacataatctttaaattccaagaaataagaattgtccggttccatgcaat 303  Q
    | ||||||| ||  |||| |||| ||||||||||||||||| |||   || |||  |||||||||||||||||||||||| |||||  || |||||||||    
T  7256336 tgtcccattttttgaggtgttcccaaatcagtcctttcaaagtggccattgacactatctttaaattccaagaaataagatttgtcttgtgccatgcaat 7256237  T
Q  304 tttcaacataaagaccaagtttagaatgtgcatggcgttcgtatgcttcagcaaaatgggagctgccaatagtagcagcccacagtttgtttacatacct 403  Q
    ||||||| ||||||||  |||| |||  | |  | ||||| || |||||||||||||||||||||||||| |||||||||||  |||||   ||||||||    
T  7256236 tttcaacgtaaagaccgggtttcgaacatcctcgacgttcatacgcttcagcaaaatgggagctgccaattgtagcagcccaaggtttgcaaacatacct 7256137  T
Q  404 tgcagagttaag 415  Q
     |||||||||||    
T  7256136 cgcagagttaag 7256125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 284
Target Start/End: Original strand, 49388138 - 49388199
Alignment:
Q  223 ttcctaaatcagtcctttcaaattggttgttcacataatctttaaattccaagaaataagaa 284  Q
    |||| ||||||||| |||||||||||   |||| || |||||| ||||||||||||||||||    
T  49388138 ttcccaaatcagtcttttcaaattggccattcaaatcatctttgaattccaagaaataagaa 49388199  T

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Target: chr8 (Bit Score: 86; Significance: 6e-41; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 171 - 440
Target Start/End: Complemental strand, 9841519 - 9841250
Alignment:
Q  171 agcagcaatataccattacaagtatcgattatatctcccattattgaaggtattcctaaatcagtcctttcaaattggttgttcacataatctttaaatt 270  Q
    ||||||||||| |||| |||| || |||||| || ||| | | ||  |||| |||||||||||||||||||||||||||  ||||||| |||||||||||    
T  9841519 agcagcaatatgccatcacaactaccgattacatatcctagtttttgaggtgttcctaaatcagtcctttcaaattggtcattcacatcatctttaaatt 9841420  T
Q  271 ccaagaaataagaattgtccggttccatgcaattttcaacataaagaccaagtttagaatgtgcatggcgttcgtatgcttcagcaaaatgggagctgcc 370  Q
    |||||||||||||| |    | |    ||||||||| |||||| |||||| | |||||| ||| | ||||||||||||||||||||||| |||||||  |    
T  9841419 ccaagaaataagaactacttgttgtggtgcaattttgaacatatagaccaggcttagaacgtggacggcgttcgtatgcttcagcaaaaggggagcttgc 9841320  T
Q  371 aatagtagcagcccacagtttgtttacataccttgcagagttaagcaggcaattaagaggaacaaaagta 440  Q
    |||||||||||||||  |||||   ||||| ||||||||||||| || |||  |||||||||| ||||||    
T  9841319 aatagtagcagcccaaggtttgcaaacatatcttgcagagttaaacaagcaggtaagaggaaccaaagta 9841250  T

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Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 218 - 433
Target Start/End: Complemental strand, 9846551 - 9846336
Alignment:
Q  218 aggtattcctaaatcagtcctttcaaattggttgttcacataatctttaaattccaagaaataagaattgtccggttccatgcaattttcaacataaaga 317  Q
    |||| |||| ||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||| |   | ||    ||| ||||||||||||||||    
T  9846551 aggtgttcccaaatcagtcctttcaaattggtcattcacatcatctttaaattccaagaaataagaactactctgtgttgtgcgattttcaacataaaga 9846452  T
Q  318 ccaagtttagaatgtgcatggcgttcgtatgcttcagcaaaatgggagctgccaatagtagcagcccacagtttgtttacataccttgcagagttaagca 417  Q
    ||| |||||||| ||||| ||| |||| |   |||| ||||| |||||||| ||||||||||||||||   |||    |||||||||||||| |||| ||    
T  9846451 ccaggtttagaacgtgcacggctttcgcacatttcaacaaaaagggagctggcaatagtagcagcccaagctttacaaacataccttgcagaattaatca 9846352  T
Q  418 ggcaattaagaggaac 433  Q
    |||| |||||| ||||    
T  9846351 ggcagttaagatgaac 9846336  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 9841676 - 9841619
Alignment:
Q  11 atctacaaggaaaagcttgaattcggaagtgccaggaacatgtgctatagtacattgc 68  Q
    ||||| ||||||||||||||||| |||||||| ||||||| ||||||||||| |||||    
T  9841676 atctataaggaaaagcttgaatttggaagtgcgaggaacacgtgctatagtatattgc 9841619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 284
Target Start/End: Complemental strand, 9902445 - 9902359
Alignment:
Q  198 attatatctcccattattgaaggtattcctaaatcagtcctttcaaattggttgttcacataatctttaaattccaagaaataagaa 284  Q
    |||||||||||||||  |  ||||||||| |||| ||||||||||||||||   |||||   ||||||||||||||| |||||||||    
T  9902445 attatatctcccatttcttgaggtattcccaaattagtcctttcaaattggccattcaccccatctttaaattccaaaaaataagaa 9902359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 9860325 - 9860271
Alignment:
Q  11 atctacaaggaaaagcttgaattcggaagtgccaggaacatgtgctatagtacat 65  Q
    |||||||| |||||||||||| | || ||||| |||||||||| |||||||||||    
T  9860325 atctacaaagaaaagcttgaagttggcagtgcgaggaacatgtactatagtacat 9860271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 440
Target Start/End: Complemental strand, 9902281 - 9902203
Alignment:
Q  362 ggagctgccaatagtagcagcccacagtttgtttacataccttgcagagttaagcaggcaattaagaggaacaaaagta 440  Q
    ||||||| ||||| ||||||||||  |||||   ||||||||||||||||| | ||| |||| ||||||||| ||||||    
T  9902281 ggagctggcaataatagcagcccaaggtttgcaaacataccttgcagagttgatcagacaatcaagaggaaccaaagta 9902203  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 9902640 - 9902591
Alignment:
Q  9 atatctacaaggaaaagcttgaattcggaagtgccaggaacatgtgctat 58  Q
    |||||||||| |||||||||||||| |  ||||||||||||| |||||||    
T  9902640 atatctacaaagaaaagcttgaatttgatagtgccaggaacacgtgctat 9902591  T

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Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 303 - 440
Target Start/End: Original strand, 5054881 - 5055018
Alignment:
Q  303 ttttcaacataaagaccaagtttagaatgtgcatggcgttcgtatgcttcagcaaaatgggagctgccaatagtagcagcccacagtttgtttacatacc 402  Q
    |||||||| |||||||||||||||||| ||||| || ||||  |  |||||  |||| |||||||||||||||||||||||||   ||||  ||||||||    
T  5054881 ttttcaacgtaaagaccaagtttagaacgtgcacggtgttcacaaacttcaaaaaaaagggagctgccaatagtagcagcccatgatttgcatacatacc 5054980  T
Q  403 ttgcagagttaagcaggcaattaagaggaacaaaagta 440  Q
    ||| |||||||| |||  | |||| |||||| ||||||    
T  5054981 ttgtagagttaaacagtgagttaataggaaccaaagta 5055018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 218 - 329
Target Start/End: Complemental strand, 46445476 - 46445365
Alignment:
Q  218 aggtattcctaaatcagtcctttcaaattggttgttcacataatctttaaattccaagaaataagaattgtcc-ggttccatgcaattttcaacataaag 316  Q
    ||||||||| ||||||  |||||||||||||  |||||||| ||| |||||||||||||||||||||  ||||  ||| || |  |||||||||||| ||    
T  46445476 aggtattccaaaatcaaacctttcaaattggccgttcacatcatcattaaattccaagaaataagaa-cgtccttgtttcacgagattttcaacatacag 46445378  T
Q  317 accaagtttagaa 329  Q
    |||||||||||||    
T  46445377 accaagtttagaa 46445365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 5054598 - 5054645
Alignment:
Q  20 gaaaagcttgaattcggaagtgccaggaacatgtgctatagtacattg 67  Q
    |||||||||||||| |||||||  ||||||| ||||||||||||||||    
T  5054598 gaaaagcttgaatttggaagtgagaggaacacgtgctatagtacattg 5054645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 440
Target Start/End: Complemental strand, 46445291 - 46445251
Alignment:
Q  400 accttgcagagttaagcaggcaattaagaggaacaaaagta 440  Q
    ||||||||||||||||||||||  |||||||||| ||||||    
T  46445291 accttgcagagttaagcaggcagctaagaggaaccaaagta 46445251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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