View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14798_low_13 (Length: 442)
Name: NF14798_low_13
Description: NF14798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14798_low_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 30901990 - 30902412
Alignment:
| Q |
1 |
gaaccagacacttctaacctcgcacttgtgtatttgctactttgtctagagacgaaataaaagttgaaaaattgtccaaaattataatctcttgagagaa |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30901990 |
gaacgagacacttctaacctcgcacttgtgtatttgctactttgtctagagacgaaataaaagttgaaaaattgtccaaaattataatctcttgtgagaa |
30902089 |
T |
|
| Q |
101 |
aattggaagtgagaaatnnnnnnncaaatatctaaataaaactatatagtacattacattcacatatacaaactcatacaaaatattgcacaacaaattt |
200 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
30902090 |
aattggaagtgagaaataaaaaaacaaagatctaaataaaactatatagtacattacattca--tatacaaactcatacaaaatattgcacaacaaattt |
30902187 |
T |
|
| Q |
201 |
taaggcaagaagccattataaacattgtgactatgcctatcaacactattaccattacaattagcattaacaacaacaacttctacattctcgccgccgg |
300 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30902188 |
taaggcaagaagccattatgaacattgtgcctatgcctatcaacactattaccattacaattagcattaacaacaacaacttctacattctcgccgccgg |
30902287 |
T |
|
| Q |
301 |
cagttttctgttccgtttcaccggcaacttctccggcagccgtcggttgataaagcccacatttctgacacctagcaacggcaaacggagcacggcaaga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30902288 |
cagttttctgttccgtttcaccggcaacttctccggcagccgtcggttgataaagcccacatttctgacacctagcaacggcaaacggagcacggcaaga |
30902387 |
T |
|
| Q |
401 |
agggcaagaagagtgagacccaagc |
425 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
30902388 |
agggcaagaagagtgagacccaagc |
30902412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University