View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14798_low_14 (Length: 425)
Name: NF14798_low_14
Description: NF14798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14798_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 15 - 406
Target Start/End: Original strand, 34109744 - 34110135
Alignment:
| Q |
15 |
cagagatgttaatagaagaactgatacaagggaaagatgcagtaaacaaacactccaaagtcccatggtggaaatgttgttgtttaccttgtttccaagg |
114 |
Q |
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| T |
34109744 |
cagagatgttaatagaagaactgatacaagggaaagatgcagtaaacaaacactccaaagtcccatggtggaaatgttgttgtttaccttgtttccaagg |
34109843 |
T |
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| Q |
115 |
agagatttatgatagagaagagaaaattgctagatccagtagtcttgttactccgatgaacacggcaagggatgttaaaaaggtattgtctatattgaaa |
214 |
Q |
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| T |
34109844 |
agagatttatgatagagaagagaaaattgctagatccagcagtcttgttactccgatgaacacggcaagggatgttaaaaaggtattgtctatattgaaa |
34109943 |
T |
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| Q |
215 |
gataggcaggaggggaggaaattcaagaggttatgtgatgctcctgtaaaacctgatctcactgttggattggattttcctttgattcagttgaagagtt |
314 |
Q |
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| T |
34109944 |
gataggcaggaggggaggaaattcaagaggttatgtgatgctcctgtaaaacctgatctcactgttggattggattttcctttgattcagttgaagagtt |
34110043 |
T |
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| Q |
315 |
ggttactcggcagtggtgtgtctgtacttgttttaaccggtttggctggatctggcaaaactactttggctacgttgctctgttgggatgac |
406 |
Q |
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| T |
34110044 |
ggttactcggcagtggtgtgtctgtacttgttttaaccggtttggctggatctggcaaaactactttggctacgttgctctgttgggatgac |
34110135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 24 - 406
Target Start/End: Original strand, 34121597 - 34121997
Alignment:
| Q |
24 |
taatagaagaactgatacaagggaaagatgcagtaaacaaacactccaaagtcccatggtggaaatgttgttgtttaccttgtttccaaggagagattta |
123 |
Q |
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| T |
34121597 |
taatggaagaacttaaacaagggaaagaggtagttaacaaacactccaaagttccttggtggaaattttgttgtctaccttgcttccaaggagaacttca |
34121696 |
T |
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| Q |
124 |
tgatagagaagagaaaattgctagatccagtagtcttgttactccgatgaacacggcaagggatgttaaaaaggtattgtctatattgaaagataggcag |
223 |
Q |
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| T |
34121697 |
agctaaggaagagaaaattgctagaacctgtagccttgttaccccgatgaacacggcaagagatgttaaagagacactttctatagtgagagatttgaag |
34121796 |
T |
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| Q |
224 |
gagggga----ggaaattcaagaggtt------atgtgatgctcctgtaaaacctgatctcactgttggattggattttcctttgattcagttgaagagt |
313 |
Q |
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| T |
34121797 |
g-ggagacaattcaatttcaagaggttatgtgaatgtgatcctcctgtaaaacctgatttcactgttgggttggatgtgcctctgcatcagttgaagaat |
34121895 |
T |
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| Q |
314 |
tggttactcggcagtggtgtg---------tctgtacttgttttaaccggtttggctggatctggcaaaactactttggctacgttgctctgttgggatg |
404 |
Q |
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||| | ||| | |||| |||| ||||||| ||| ||||| || ||||||||||| || ||||| ||||||||||||||||| ||||| |||| |
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| T |
34121896 |
tgggtgctcagtagtgatgtgtctgtagactctgtacatgtgttaactggcttggctggatccgggaaaaccactttggctacgttgctatgttgcgatg |
34121995 |
T |
|
| Q |
405 |
ac |
406 |
Q |
| |
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|| |
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| T |
34121996 |
ac |
34121997 |
T |
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