View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14798_low_16 (Length: 401)
Name: NF14798_low_16
Description: NF14798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14798_low_16 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 45106633 - 45106233
Alignment:
| Q |
1 |
ccttgcatttaattgagttcgccggttgggcttcacccattttcatttctcacaaaaagaagaaagttgtttctttaaacttgcatgactcatactctga |
100 |
Q |
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| T |
45106633 |
ccttgcatttaatcgagttagccggaagggcttcacccattttcatttctcacaaaaagaagaaagttgtttctttaaacttgcatgactcatactctga |
45106534 |
T |
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| Q |
101 |
taatgttgttttaagtctcaaactatacgagagtgataaacaaggcgcagcaatagtaaacccttatactgctatatctccacttaacttaatgcatgaa |
200 |
Q |
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| T |
45106533 |
taatgttgttttaagtctcaaactatacgagagtgataaacaaggcgcagcaatagtaaacccatatactgctatatctccacttaacttaatgcatgaa |
45106434 |
T |
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| Q |
201 |
gatgtttgtcacctagcattggataaagtttcatcaattatatttcttccttttcataaaaaatggtcaagtgatggaaagcttgaatatgatgacaagg |
300 |
Q |
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| T |
45106433 |
gatgtttgtcacctagcattggataaagtttcatcaattatatttcttccttttcataaaaaatggtcaagtgatggaaagcttgaatatgatgacaaga |
45106334 |
T |
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| Q |
301 |
acataaggtctttaaaccgcaacatcttggaaaaatctccatgctcggttggaatcttagtgactcgctttgttcatcaaacagattcatcgcttcgatt |
400 |
Q |
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| T |
45106333 |
acataaggtctttaaaccgcaacatcttggaaaaatctccatgctcggttggaatcttagtgactcgctttgttcatcaaacagattcatcgcttcgatt |
45106234 |
T |
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| Q |
401 |
a |
401 |
Q |
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| T |
45106233 |
a |
45106233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 277
Target Start/End: Original strand, 37840908 - 37840988
Alignment:
| Q |
197 |
tgaagatgtttgtcacctagcattggataaagtttcatcaattatatttcttccttttcataaaaaatggtcaagtgatgg |
277 |
Q |
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| T |
37840908 |
tgaagatgtttgtaatcttgcattagacaaagttgcaaccattataattcttccatttcatataacatggtcaagtgatgg |
37840988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 299
Target Start/End: Complemental strand, 38381360 - 38381258
Alignment:
| Q |
197 |
tgaagatgtttgtcacctagcattggataaagtttcatcaattatatttcttccttttcataaaaaatggtcaagtgatggaaagcttgaatatgatgac |
296 |
Q |
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| T |
38381360 |
tgaagatgtttgtaatcttgcattggacaaagttgcaaccatcatcattcttccatttcatataagatggtcaagtgatggtgaagttgaatctgatgac |
38381261 |
T |
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| Q |
297 |
aag |
299 |
Q |
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||| |
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| T |
38381260 |
aag |
38381258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 277
Target Start/End: Complemental strand, 38398989 - 38398909
Alignment:
| Q |
197 |
tgaagatgtttgtcacctagcattggataaagtttcatcaattatatttcttccttttcataaaaaatggtcaagtgatgg |
277 |
Q |
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| T |
38398989 |
tgaagatgtttgtaatcttgcattggacaaagttgcaaccatcatcattcttccatttcatataagatggtcaagtgatgg |
38398909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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