View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14798_low_19 (Length: 392)
Name: NF14798_low_19
Description: NF14798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14798_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 78 - 365
Target Start/End: Complemental strand, 6585200 - 6584911
Alignment:
| Q |
78 |
tttaggtgttgctattggagctggttggcaatctcttgtagcttacatcaatcttggatcctactatgctgttggattaccagcagggatattgttggga |
177 |
Q |
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| T |
6585200 |
tttaggtgttgctattggagctggttggcaatctcttgtagcttacatcaatcttggatcctactatgctgttggattaccagcagggatattgttggga |
6585101 |
T |
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| Q |
178 |
ttcacatttggttttggagcagaggtgatttattaccccttatttctcttgaatttaatactaaaacactttaaatatatagtataa--attagaaggat |
275 |
Q |
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| T |
6585100 |
ttcacatttggttttggagcagaggtgatttattactccttatttctcttgaatttaatactaaaacactttaaatatatagtataattattagaaggat |
6585001 |
T |
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| Q |
276 |
tcatttagtaatttaatatttattgtttgttaatgaggactattttgtaatttttaattgtatgatcaacataaatttatttgttcttac |
365 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
6585000 |
tcgtttagtaatttaatatttattgtttgttaatgaggactattttgtaactttttattgtatgatcaacataaatttatttgttcttac |
6584911 |
T |
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