View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14798_low_2 (Length: 673)

Name: NF14798_low_2
Description: NF14798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14798_low_2
NF14798_low_2
[»] chr8 (1 HSPs)
chr8 (19-657)||(36536273-36536911)


Alignment Details
Target: chr8 (Bit Score: 623; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 19 - 657
Target Start/End: Original strand, 36536273 - 36536911
Alignment:
Q  19 aagaacctctcttgataatttataatgttataggaaaactcagctccaatatcatcttcaggaagccaagcaacaactccaccaacactatgtatcattt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36536273 aagaacctctcttgataatttataatgttataggaaaactcagctccaacatcatcttcaggaagccaagcaacaactccaccaacactatgtatcattt 36536372  T
Q  119 tatctgtagccataagaacttcatttttccagacaccaacaggacgctctaaactcgtaaacataccaagagtttgcaccttcatccaacactcaacacc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36536373 tatctgtagccataagaacttcatttttccagacaccaacaggacgctctaaactcgtaaacataccaagagtttgcaccttcatccaacactcaacacc 36536472  T
Q  219 ttcatattcatcagacaaaatccacaaatctaaccattgttccatacttttactttttaaacaagtaatcaatgaaacagaatccttataaattacaagt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36536473 ttcatattcatcagacaaaatccacaaatctaaccattgttccatacttttactttttaaacaagtaatcaatgaaacagaatccttataaattacaagt 36536572  T
Q  319 ttcttataaacttcatcacagtctttaaaagaattaatcggcaactcaatcttgctaataacattgtcaattgaattaaaagagataatcacttcatgac 418  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36536573 ttcttataaacttcatcacagtctttaaaaggattaatcggcaactcaatcttgctaataacattgtcaattgaattaaaagagataatcacttcatgac 36536672  T
Q  419 taaccttttcagttacctccatagcaatccaaaacaaggttccttccattgtcacattgttctcagtccaaaacaaatgtcccttcaaaatcaaattttg 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36536673 taaccttttcagttacctccatagcaatccaaaacaaggttccttccattgtcacattgttctcagtccaaaacaaatgtcccttcaaaatcaaattttg 36536772  T
Q  519 atcacaaccctttatttctctccataaccttttactcaatgagtacttttcacctccaacagcataagttcttctactagaatccctctttgtgttttca 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36536773 atcacaaccctttatttctctccataaccttttactcaatgagtacttttcacctccaacagcataagttcttctactagaatccctctttgtgttttca 36536872  T
Q  619 aaagagtgaaaccttaccacataaaaataattattactt 657  Q
    |||||||||||||||| ||||||||||| ||||||||||    
T  36536873 aaagagtgaaaccttatcacataaaaatcattattactt 36536911  T

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