View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14798_low_20 (Length: 381)
Name: NF14798_low_20
Description: NF14798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14798_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 100 - 370
Target Start/End: Complemental strand, 17003446 - 17003176
Alignment:
| Q |
100 |
taatagccgcaaaatttatgcaaaatcgttatcttaagcaggtgttcttactggaaagtatactccacgaaatcctccatctgggcctcgaggtagaatt |
199 |
Q |
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| T |
17003446 |
taatagccgcaaaatttatgcaaaatcgttatcttaagcaggtgttcttactggaaagtatactccacgaaatcctccatctgggcctcgaggtagaatt |
17003347 |
T |
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| Q |
200 |
tatactccagaattcctaacaaaggtacaacttttctgaaatttccgtatccaatgaatgataccgatattacttggttcctcaagtgtttatttgtttt |
299 |
Q |
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| T |
17003346 |
tatactccagaattcttaacaaaggtacaacttttctgaaatttccgtatctaatgaattataccgatagtacttggttcctcaaatgtttatttgtttt |
17003247 |
T |
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| Q |
300 |
gcagcttcaaccactgctaaagaagatcactgaaataggagacaagtacaataaaacttctacacaggttc |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
17003246 |
gcagcttcaaccactgctaaagaagatcactgaaataggagagaaatacaataaaacttctacacaggttc |
17003176 |
T |
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