View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14798_low_24 (Length: 346)
Name: NF14798_low_24
Description: NF14798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14798_low_24 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 13 - 332
Target Start/End: Original strand, 27776390 - 27776709
Alignment:
| Q |
13 |
tcatcactccaaggattaatctccttaacaggatcaacattccttaaagcacaccaaacagcagtgttacatttaaatccagacccaaatgcaatttgcc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27776390 |
tcatcactccaaggattaatctccttaacaggatcaacattccttaaagcacaccaaacagcagtgttacatttaaatccagacccaaatgcaatttgcc |
27776489 |
T |
|
| Q |
113 |
aaatcctatcacctttccttatccttcccttagcttcacaataagccaaaacataccaaacagaactacttgaagtatttccatatctataaagtgtcat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27776490 |
aaatcctatcacctttccttatccttcccttagcttcacaataagccaaaacataccaaacagaactacttgaagtatttccatatctataaagtgtcat |
27776589 |
T |
|
| Q |
213 |
tcttgaaggctcaatttgccaatcacttaatccaagcactttttgtatctcatcttgaacaccttttccaccagtatgaatacaaaaatgctcaaaacat |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27776590 |
tcttgaaggctcaatttgccaatcacttaatccaagcactttttgtatctcatcttgaacaccttttccaccagtatgaatacaaaaatgctcaaaacat |
27776689 |
T |
|
| Q |
313 |
agcttaaaatcaggtgtata |
332 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
27776690 |
agcttaaaatcaggtgtata |
27776709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 42 - 224
Target Start/End: Complemental strand, 10280138 - 10279956
Alignment:
| Q |
42 |
aggatcaacattccttaaagcacaccaaacagcagtgttacatttaaatccagacccaaatgcaatttgccaaatcctatcacctttccttatccttccc |
141 |
Q |
| |
|
||||||||||||| | |||||| ||||||||||||| ||| ||||||||||| ||||| || |||||||||||| ||| || || | | || ||| |
|
|
| T |
10280138 |
aggatcaacattcttcaaagcataccaaacagcagtattaaccttaaatccagatccaaaagccatttgccaaatcttatgtccctttttaactctcccc |
10280039 |
T |
|
| Q |
142 |
ttagcttcacaataagccaaaacataccaaacagaactacttgaagtatttccatatctataaagtgtcattcttgaaggctc |
224 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||| ||| || || ||||||||||| |||||||||||||||||||| |
|
|
| T |
10280038 |
ttagcttcacaataagacaattcataccaaacagaacttgatgatgtgttaccatatctatatagtgtcattcttgaaggctc |
10279956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 13 - 332
Target Start/End: Original strand, 19742751 - 19743070
Alignment:
| Q |
13 |
tcatcactccaaggattaatctccttaacaggatcaacattccttaaagcacaccaaacagcagtgttacatttaaatccagacccaaatgcaatttgcc |
112 |
Q |
| |
|
||||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
19742751 |
tcatcactccaaggattgatctctttaattggatcaacattccttaatgcacaccaaacagcagtgttacacttaaatccagacccaaatgcaatttgcc |
19742850 |
T |
|
| Q |
113 |
aaatcctatcacctttccttatccttcccttagcttcacaataagccaaaacataccaaacagaactacttgaagtatttccatatctataaagtgtcat |
212 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |||||||||||||| ||||| ||||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
19742851 |
aaatcctatcaccttttcttattcttcctttagcttcacaatatgccaactcataccaaacagaactacttgaagtgttaccatatctataaagtgtcat |
19742950 |
T |
|
| Q |
213 |
tcttgaaggctcaatttgccaatcacttaatccaagcactttttgtatctcatcttgaacaccttttccaccagtatgaatacaaaaatgctcaaaacat |
312 |
Q |
| |
|
|||||||||| | ||| |||||||||| || ||||||||||| |||||||| |||| |||||||||| ||||||| |||||| || |||||||| |
|
|
| T |
19742951 |
ctttgaaggctctaattgaaaatcacttaaccccagcactttttgaatctcatcaagaaccgcttttccacccgtatgaacacaaaagtggtcaaaacac |
19743050 |
T |
|
| Q |
313 |
agcttaaaatcaggtgtata |
332 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
19743051 |
aacttaaaatcaggtgtata |
19743070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 13 - 332
Target Start/End: Complemental strand, 19797337 - 19797018
Alignment:
| Q |
13 |
tcatcactccaaggattaatctccttaacaggatcaacattccttaaagcacaccaaacagcagtgttacatttaaatccagacccaaatgcaatttgcc |
112 |
Q |
| |
|
||||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
19797337 |
tcatcactccaaggattgatctctttaattggatcaacattccttaatgcacaccaaacagcagtgttacacttaaatccagacccaaatgcaatttgcc |
19797238 |
T |
|
| Q |
113 |
aaatcctatcacctttccttatccttcccttagcttcacaataagccaaaacataccaaacagaactacttgaagtatttccatatctataaagtgtcat |
212 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |||||||||||||| ||||| ||||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
19797237 |
aaatcctatcaccttttcttattcttcctttagcttcacaatatgccaactcataccaaacagaactacttgaagtgttaccatatctataaagtgtcat |
19797138 |
T |
|
| Q |
213 |
tcttgaaggctcaatttgccaatcacttaatccaagcactttttgtatctcatcttgaacaccttttccaccagtatgaatacaaaaatgctcaaaacat |
312 |
Q |
| |
|
|||||||||| | ||| |||||||||| || ||||||||||| |||||||| |||| |||||||||| ||||||| |||||| || |||||||| |
|
|
| T |
19797137 |
ctttgaaggctctaattgaaaatcacttaaccccagcactttttgaatctcatcaagaaccgcttttccacccgtatgaacacaaaagtggtcaaaacac |
19797038 |
T |
|
| Q |
313 |
agcttaaaatcaggtgtata |
332 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
19797037 |
aacttaaaatcaggtgtata |
19797018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 13 - 332
Target Start/End: Original strand, 19539708 - 19540027
Alignment:
| Q |
13 |
tcatcactccaaggattaatctccttaacaggatcaacattccttaaagcacaccaaacagcagtgttacatttaaatccagacccaaatgcaatttgcc |
112 |
Q |
| |
|
||||||||||||||||| ||||| |||| |||||||||||| |||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
19539708 |
tcatcactccaaggattgatctctttaattggatcaacattctttaatgcacaccaaacagcagtgttacacttaaatctagacccaaatgcaatttgcc |
19539807 |
T |
|
| Q |
113 |
aaatcctatcacctttccttatccttcccttagcttcacaataagccaaaacataccaaacagaactacttgaagtatttccatatctataaagtgtcat |
212 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |||||||||||||| ||||| ||||||||||| ||||||||||||| || |||||||||||||||||||| |
|
|
| T |
19539808 |
aaatcctatcaccttttcttattcttcctttagcttcacaatatgccaactcataccaaacaaaactacttgaagtgttaccatatctataaagtgtcat |
19539907 |
T |
|
| Q |
213 |
tcttgaaggctcaatttgccaatcacttaatccaagcactttttgtatctcatcttgaacaccttttccaccagtatgaatacaaaaatgctcaaaacat |
312 |
Q |
| |
|
|||||||||| | ||| ||||||||||||| |||||||||||||||||||| |||| |||||||||| ||||||| |||||| || |||||||| |
|
|
| T |
19539908 |
ctttgaaggctctaattgaaaatcacttaatcctagcactttttgtatctcatcaagaaccgcttttccacccgtatgaacacaaaagtggtcaaaacac |
19540007 |
T |
|
| Q |
313 |
agcttaaaatcaggtgtata |
332 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
19540008 |
aacttaaaatcaggtgtata |
19540027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 13 - 332
Target Start/End: Original strand, 19671631 - 19671950
Alignment:
| Q |
13 |
tcatcactccaaggattaatctccttaacaggatcaacattccttaaagcacaccaaacagcagtgttacatttaaatccagacccaaatgcaatttgcc |
112 |
Q |
| |
|
||||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
19671631 |
tcatcactccaaggattgatctctttaattggatcaacattccttaatgcacaccaaacaggagtgttacacttaaatccagacccaaatgcaatttgcc |
19671730 |
T |
|
| Q |
113 |
aaatcctatcacctttccttatccttcccttagcttcacaataagccaaaacataccaaacagaactacttgaagtatttccatatctataaagtgtcat |
212 |
Q |
| |
|
|||||||||||||||| | || ||||| |||||||||||||| ||||| ||||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
19671731 |
aaatcctatcaccttttcatactcttcctttagcttcacaatatgccaactcataccaaacagaactacttgaagtgttaccatatctataaagtgtcat |
19671830 |
T |
|
| Q |
213 |
tcttgaaggctcaatttgccaatcacttaatccaagcactttttgtatctcatcttgaacaccttttccaccagtatgaatacaaaaatgctcaaaacat |
312 |
Q |
| |
|
|||||||||| | ||| |||||||||| || |||||||||||||||||||| |||| |||||||||| ||||||| |||||| || |||||||| |
|
|
| T |
19671831 |
ctttgaaggctctaattgaaaatcacttaaccctagcactttttgtatctcatcaagaaccgcttttccacccgtatgaacacaaaagtggtcaaaacac |
19671930 |
T |
|
| Q |
313 |
agcttaaaatcaggtgtata |
332 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
19671931 |
aacttaaaatcaggtgtata |
19671950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 332
Target Start/End: Complemental strand, 26453373 - 26453321
Alignment:
| Q |
280 |
ccaccagtatgaatacaaaaatgctcaaaacatagcttaaaatcaggtgtata |
332 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
26453373 |
ccaccagcatgaatacaaaaatgctcaaaagcaagcttaaaatcaggtatata |
26453321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 32 - 326
Target Start/End: Complemental strand, 34053438 - 34053144
Alignment:
| Q |
32 |
tctccttaacaggatcaacattccttaaagcacaccaaacagcagtgttacatttaaatccagacccaaatgcaatttgccaaatcctatcacctttcct |
131 |
Q |
| |
|
|||||||| | |||||||| |||| || |||| ||| |||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||| || |
|
|
| T |
34053438 |
tctccttagctggatcaacggtcctcaatgcacgccacacagcactgttacatttaaatccagaaccaaatgcaatttgccaagtcctatcaccttttct |
34053339 |
T |
|
| Q |
132 |
tatccttcccttagcttcacaataagccaaaacataccaaacagaactacttgaagtatttccatatctataaagtgtcattcttgaaggctcaatttgc |
231 |
Q |
| |
|
||||| || ||||||||| ||||||||| ||||||| | |||||||| |||||||| ||| |||||| |||||||||||||| || || || ||| |
|
|
| T |
34053338 |
aatcctccctttagcttcagtataagccaattcataccataatgaactactagaagtattaccaaatctatttagtgtcattcttgatggttccatatgc |
34053239 |
T |
|
| Q |
232 |
caatcacttaatccaagcactttttgtatctcatcttgaacaccttttccaccagtatgaatacaaaaatgctcaaaacatagcttaaaatcagg |
326 |
Q |
| |
|
|||||||| | |||| ||| | || ||||| |||| || ||||||||| |||||||||||||||||||||| || ||||||||||| |
|
|
| T |
34053238 |
caatcactaaggtcaagatttttctctaattcatccaaaacagctcttccaccagcatgaatacaaaaatgctcaaaagctaatttaaaatcagg |
34053144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 66 - 326
Target Start/End: Complemental strand, 15239705 - 15239445
Alignment:
| Q |
66 |
ccaaacagcagtgttacatttaaatccagacccaaatgcaatttgccaaatcctatcacctttccttatccttcccttagcttcacaataagccaaaaca |
165 |
Q |
| |
|
|||||||||| | ||||| ||||| ||||| |||||||||||||||||| | ||||||||||| | ||||| || ||||||||| ||||||||| || |
|
|
| T |
15239705 |
ccaaacagcactattacacttaaaaccagaaccaaatgcaatttgccaagttctatcaccttttttaatcctccctttagcttcagtataagccaattca |
15239606 |
T |
|
| Q |
166 |
taccaaacagaactacttgaagtatttccatatctataaagtgtcattcttgaaggctcaatttgccaatcacttaatccaagcactttttgtatctcat |
265 |
Q |
| |
|
||||| | |||||||| ||||| || ||| |||||| |||||||| ||||| || || || |||||||||||||| |||| ||| | | ||||| |
|
|
| T |
15239605 |
taccacaatgaactactagaagtgttaccaaatctattcagtgtcatccttgatggttccatatgccaatcacttaaatcaagatttttctccaactcat |
15239506 |
T |
|
| Q |
266 |
cttgaacaccttttccaccagtatgaatacaaaaatgctcaaaacatagcttaaaatcagg |
326 |
Q |
| |
|
| |||| || ||||||||| |||||||||||||||||||||| || ||||||||||| |
|
|
| T |
15239505 |
ccaaaacagctcttccaccagcatgaatacaaaaatgctcaaaagctaatttaaaatcagg |
15239445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 233
Target Start/End: Original strand, 23499099 - 23499244
Alignment:
| Q |
88 |
aatccagacccaaatgcaatttgccaaatcctatcacctttccttatccttcccttagcttcacaataagccaaaacataccaaacagaactacttgaag |
187 |
Q |
| |
|
||||| || |||||||| |||||||| | ||||| |||||| | ||||||||||| ||||| |||||||| | ||||||| ||||| || || | |
|
|
| T |
23499099 |
aatcctgaaccaaatgctatttgccatgttctatctcctttcttgatccttcccttggcttccgtgtaagccaattcgtaccaaagcgaactgctcgagg |
23499198 |
T |
|
| Q |
188 |
tatttccatatctataaagtgtcattcttgaaggctcaatttgcca |
233 |
Q |
| |
|
| |||||| | | |||||||||||||||||| ||||| || ||||| |
|
|
| T |
23499199 |
tgtttccaaaacgataaagtgtcattcttgacggctccatatgcca |
23499244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University