View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14798_low_26 (Length: 321)

Name: NF14798_low_26
Description: NF14798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14798_low_26
NF14798_low_26
[»] chr4 (2 HSPs)
chr4 (211-306)||(8346349-8346444)
chr4 (60-122)||(8346202-8346264)
[»] chr8 (1 HSPs)
chr8 (60-115)||(12755412-12755467)
[»] chr1 (1 HSPs)
chr1 (60-123)||(52053896-52053959)
[»] chr2 (1 HSPs)
chr2 (60-121)||(32447839-32447900)


Alignment Details
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 211 - 306
Target Start/End: Original strand, 8346349 - 8346444
Alignment:
Q  211 cctgatgcccaagatagagatacttgaggcccaaattagacatcatgaaacatcaaggcnnnnnnnttcttgtaagtacattgctggctgtctgtg 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||       || || ||||||||||||||||||||||||    
T  8346349 cctgatgcccaagatagagatacttgaggcccaaattagacatcatgaaacaccaaggcaattttttttttttaagtacattgctggctgtctgtg 8346444  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 60 - 122
Target Start/End: Original strand, 8346202 - 8346264
Alignment:
Q  60 attatctgatgatttcagatatagtcttaacattcgtcagcatcccgtttcaactacaggggc 122  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||    
T  8346202 attatctgatgatttcagatatagtctcaacattcgtcaacatcccgtttcgactacaggggc 8346264  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 12755467 - 12755412
Alignment:
Q  60 attatctgatgatttcagatatagtcttaacattcgtcagcatcccgtttcaacta 115  Q
    ||||| ||||||||||||| ||||| ||||||||||||| | ||||||||| ||||    
T  12755467 attatttgatgatttcagagatagttttaacattcgtcaacctcccgtttcgacta 12755412  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 123
Target Start/End: Complemental strand, 52053959 - 52053896
Alignment:
Q  60 attatctgatgatttcagatatagtcttaacattcgtcagcatcccgtttcaactacaggggcg 123  Q
    ||||| ||||||||||||| ||||||| ||||| ||||| | ||||||||| ||||| ||||||    
T  52053959 attatttgatgatttcagagatagtctcaacatccgtcaacctcccgtttcgactacgggggcg 52053896  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 121
Target Start/End: Original strand, 32447839 - 32447900
Alignment:
Q  60 attatctgatgatttcagatatagtcttaacattcgtcagcatcccgtttcaactacagggg 121  Q
    ||||| ||||||||||||| ||||||| ||||| ||||| | ||||||||| ||||| ||||    
T  32447839 attatttgatgatttcagagatagtctcaacatccgtcaacctcccgtttcgactacggggg 32447900  T

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