View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14798_low_3 (Length: 614)
Name: NF14798_low_3
Description: NF14798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14798_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 299
Target Start/End: Original strand, 27099031 - 27099308
Alignment:
| Q |
17 |
cagttagcacttgcttccaagaatggaacaccataattttctgcattaggattgcaattgactctaagttttccatcatcagcatgtttcaccattctac |
116 |
Q |
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| T |
27099031 |
cagttagcaattgcttccaagaatggaacaccataattttctgcattaggattgcaattgactctaagttttccatcatcagcatgtttcaccattctac |
27099130 |
T |
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| Q |
117 |
ctgcaagaagtagtgataaactgatatgttaattggtatggtggtagtttgaggaataaatatagaggttg---agctataagaagttgtgttccatttc |
213 |
Q |
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| T |
27099131 |
ctgcaagaaatagtgata--------tgttaattggtttggtggtagtttgaggaataaatatagaggttgttgagttataagaagttgtgttccatttc |
27099222 |
T |
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| Q |
214 |
ataaaaatattcgaaagtggaccctagcaattttttgtaaaataatgcattttcctatcagtacaagaaaatataaattttgctac |
299 |
Q |
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| T |
27099223 |
ataaaaatattcaaaagtggaccattgcaattttttgtaaaataatggattttgctatcactacaagaacatataaattttgctac |
27099308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 17 - 271
Target Start/End: Original strand, 27106030 - 27106272
Alignment:
| Q |
17 |
cagttagcacttgcttccaagaatggaacaccataattttctgcattaggattgcaattgactctaagttttccatcatcagcatgtttcaccattctac |
116 |
Q |
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| T |
27106030 |
cagttagcacttgcttccaagaatggaacaccataattttctgcattagggttgcaattgactctaagttttccatcgtcagcatgtttcaccattctac |
27106129 |
T |
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| Q |
117 |
ctgcaagaagtagtgataaactgatatgttaattggtatggtggtagtttgaggaataaatatagaggttgagctataagaagttgtgttccatttcata |
216 |
Q |
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| T |
27106130 |
ctgcaagacgtag--------agatttgttaattg---ttttggtagcttgaggaaagaatatagagattgaattataagaagttgtgttcgatttcata |
27106218 |
T |
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| Q |
217 |
aaaatattcgaaagtggaccctagcaattttttgtaaaataatgcattttcctat |
271 |
Q |
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| T |
27106219 |
aaaatattc-aaaatggaccattgcaactttttgtaaaataatggattttgctat |
27106272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 383 - 599
Target Start/End: Original strand, 27099436 - 27099639
Alignment:
| Q |
383 |
gtttgacaaagcttatattacattcaccgccccagactgaagcttcatcgccgatcaccgtctcaccgactccgatcaacgagttgccatctccagttca |
482 |
Q |
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| T |
27099436 |
gtttgataaagcttatattacattcaccgtcccaaactgaagctttatcgtcgatcaccgtttcaccgagtca-------------ccatctccagttca |
27099522 |
T |
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| Q |
483 |
cagattcatcatgttcgatctccgattcaccatatctgattcatcgatttgctatctccgatctctaattcaccatcttctgattcactaatttacatct |
582 |
Q |
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| T |
27099523 |
cggattcaccatgttcgatctctgattcaccatatctgattcatcgatttgttgtctccgatctctaattcacaatcttctgattcactgacttacatcc |
27099622 |
T |
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| Q |
583 |
ccgatttacaatctctg |
599 |
Q |
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| T |
27099623 |
ccgattcacaatctctg |
27099639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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