View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14798_low_34 (Length: 219)
Name: NF14798_low_34
Description: NF14798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14798_low_34 |
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| [»] scaffold0903 (1 HSPs) |
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Alignment Details
Target: scaffold0903 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: scaffold0903
Description:
Target: scaffold0903; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 13 - 202
Target Start/End: Original strand, 1063 - 1252
Alignment:
| Q |
13 |
taatactcagttggcttgtgtttgtattgtatgttaagaattgatgtaatggggttgtttgggagggttaattgtatgtgttatgttaacaagtgttgta |
112 |
Q |
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| T |
1063 |
taatactcagttggcttgtgtttgtattgtatgttaagaattgatgtaatggggttgtttgggagggttaattgtatgtgttaagttaacaagtgttgta |
1162 |
T |
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| Q |
113 |
ttgtgttatgagtttactctaatgtattgtgaatcaaagttaactttgttgataatcaatgaatgaaaatcttcaatttggtaatgtaat |
202 |
Q |
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| T |
1163 |
ttgtgttatgagtttactctaatgtattgtgaatcaaagttaactttgttgataatcaatgaatgaaaatgttcaatttggtaatgtaat |
1252 |
T |
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Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 13 - 202
Target Start/End: Original strand, 21717483 - 21717672
Alignment:
| Q |
13 |
taatactcagttggcttgtgtttgtattgtatgttaagaattgatgtaatggggttgtttgggagggttaattgtatgtgttatgttaacaagtgttgta |
112 |
Q |
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| T |
21717483 |
taattctcagttggcttgtgtttgtattgtatgttaagaattgatgtaatggggttgtttgggagggttaattgtatgtgttaagttaacaagtgttgta |
21717582 |
T |
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| Q |
113 |
ttgtgttatgagtttactctaatgtattgtgaatcaaagttaactttgttgataatcaatgaatgaaaatcttcaatttggtaatgtaat |
202 |
Q |
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| T |
21717583 |
ttgtgttatgagttcactttaatgtatattgaatcaaagttaactttgttgataatcaatgaatgaaaatgttcaatttggtaatgtaat |
21717672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 203
Target Start/End: Complemental strand, 20656049 - 20655981
Alignment:
| Q |
135 |
tgtattgtgaatcaaagttaactttgttgataatcaatgaatgaaaatcttcaatttggtaatgtaatt |
203 |
Q |
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| T |
20656049 |
tgtattgtgaatgaaagttaactttgttttgaatcaatgaatgaaaatgttctatttggttatgtaatt |
20655981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 20656192 - 20656147
Alignment:
| Q |
19 |
tcagttggcttgtgtttgtattgtatgttaagaa-ttgatgtaatg |
63 |
Q |
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| T |
20656192 |
tcagttggcttttgtttggattgtatgttaagaatttgatgtaatg |
20656147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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