View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14798_low_35 (Length: 214)
Name: NF14798_low_35
Description: NF14798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14798_low_35 |
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| [»] scaffold0209 (1 HSPs) |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 20422779 - 20422581
Alignment:
| Q |
1 |
acacacacacattatgtcccgtgactagaagcccttcccttttatagtaaaacaattggtatggtattctagaagtggttatggtttattttacacaaat |
100 |
Q |
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| T |
20422779 |
acacacacacattatgtcccctgactagaagtccttcccttttatagtaaaacaattggtatggtattctagaagtggttatggtttattttacacaaat |
20422680 |
T |
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| Q |
101 |
aagca-aaaatacttgaaccctatagaagatacttttatcagagaggtaacatccttgtgttaaaaactaacaactaataccactttatattactaatt |
198 |
Q |
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| T |
20422679 |
aagcaaaaaatacttgaaccctatagaagatacttttatcagagaggtaacatccttgtgttaaaaactaacaactaataccactttatattactaatt |
20422581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 9883416 - 9883614
Alignment:
| Q |
1 |
acacacacacattatgtcccgtgactagaagcccttcccttttatagtaaaacaattggtatggtattctagaagtggttatggtttattttacacaaat |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
9883416 |
acacacacacattatgtcccctgactagaagcccttcccttttatagtaaaacaattggtatggtattctagaagtggttatggtttgttttacacaaat |
9883515 |
T |
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| Q |
101 |
aagc-aaaaatacttgaaccctatagaagatacttttatcagagaggtaacatccttgtgttaaaaactaacaactaataccactttatattactaatt |
198 |
Q |
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| T |
9883516 |
aagcaaaaaatacttgaaccctatagaagatacttttatcagagaggtaacatccttgtgttagaaactaacaactaataccactttatattactaatt |
9883614 |
T |
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Target: scaffold0209 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 105
Target Start/End: Complemental strand, 16502 - 16398
Alignment:
| Q |
3 |
acacacacattatgtcccgtgactagaagcccttcccttttatag--taaaacaattggtatggtattctagaagtggttatggtttattttacacaaat |
100 |
Q |
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|||||||||||||||||| | || ||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||| |||||||||||| |
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| T |
16502 |
acacacacattatgtcccctaaccagaagcccttcccttttatagagtaaaacaattggtatggtattctagaagtgattctggtttgttttacacaaat |
16403 |
T |
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| Q |
101 |
aagca |
105 |
Q |
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| T |
16402 |
aagca |
16398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 19525 - 19629
Alignment:
| Q |
3 |
acacacacattatgtcccgtgactagaagcccttcccttttatag--taaaacaattggtatggtattctagaagtggttatggtttattttacacaaat |
100 |
Q |
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|||||||||||||||||| | || ||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||| |||||||||||| |
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| T |
19525 |
acacacacattatgtcccctaaccagaagcccttcccttttatagagtaaaacaattggtatggtattctagaagtgattctggtttgttttacacaaat |
19624 |
T |
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| Q |
101 |
aagca |
105 |
Q |
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||||| |
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| T |
19625 |
aagca |
19629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 198
Target Start/End: Complemental strand, 56542898 - 56542852
Alignment:
| Q |
152 |
tccttgtgttaaaaactaacaactaataccactttatattactaatt |
198 |
Q |
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||||||||||| |||| ||||||||||||| ||||||| |||||||| |
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| T |
56542898 |
tccttgtgttagaaacaaacaactaatacctctttatactactaatt |
56542852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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