View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14798_low_37 (Length: 203)

Name: NF14798_low_37
Description: NF14798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14798_low_37
NF14798_low_37
[»] chr1 (11 HSPs)
chr1 (18-187)||(48661096-48661265)
chr1 (18-180)||(48656118-48656283)
chr1 (24-184)||(48666694-48666857)
chr1 (18-98)||(48652646-48652726)
chr1 (17-118)||(11546756-11546857)
chr1 (113-182)||(48618618-48618687)
chr1 (113-184)||(48652768-48652839)
chr1 (18-98)||(48618729-48618809)
chr1 (18-184)||(48584871-48585040)
chr1 (19-98)||(48628452-48628531)
chr1 (113-182)||(11546879-11546948)
[»] chr3 (2 HSPs)
chr3 (18-92)||(19666091-19666165)
chr3 (113-182)||(19665974-19666043)
[»] chr8 (3 HSPs)
chr8 (19-92)||(27223491-27223564)
chr8 (18-98)||(27227681-27227761)
chr8 (114-184)||(27227816-27227886)


Alignment Details
Target: chr1 (Bit Score: 166; Significance: 5e-89; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 48661096 - 48661265
Alignment:
Q  18 tgaagaatgagcaagtacttgttcttgtggactccatttcactacttttcctctcccacttgtttcctccaagaagccatcggggaaaacatgttgtttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48661096 tgaagaatgagcaagtacttgttcttgtggactccatttcactacttttcctctcccacttgtttcctccaagaagccatcggggaaaacatgttgtttt 48661195  T
Q  118 aatacccacaaaaacgagacttgagaattcaataacccatgtgcaatttcgttaacttgttcttgagtat 187  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  48661196 aatacccacaaaaacgagacttgagaattcaataacccatatgcaatttcgttaacttgttcttgagtat 48661265  T

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Target: chr1; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 48656118 - 48656283
Alignment:
Q  18 tgaagaatgagcaagtacttgttcttgtggactccatttcactacttttcctctcccacttgtttcctccaagaagccatcggggaa---aacatgttgt 114  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||  || ||   | |||| | |    
T  48656118 tgaaggatgagcaagtacttgttcttgtggactccatttcactacttttcctctcccacttgtttcctccaaaaatccatgaggcaaatcatcatgcttt 48656217  T
Q  115 tttaatacccacaaaaacgagacttgagaattcaataacccatgtgcaatttcgttaacttgttct 180  Q
    ||   | |||| ||||| | ||||||||||||||||||||||| ||||||||| || |||||||||    
T  48656218 ttctttgcccataaaaatgtgacttgagaattcaataacccatatgcaatttcattcacttgttct 48656283  T

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Target: chr1; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 24 - 184
Target Start/End: Original strand, 48666694 - 48666857
Alignment:
Q  24 atgagcaagtacttgttcttgtggactccatttcactacttttcctctcccacttgtttcctccaagaagccatcggggaa---aacatgttgttttaat 120  Q
    |||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||  || ||   | ||||||||||   |    
T  48666694 atgagccaatacttgttcttgtggactccaattcactacttttcctctcccacttgtttcctccaagaatccatacggcaaatcatcatgttgtttcttt 48666793  T
Q  121 acccacaaaaacgagacttgagaattcaataacccatgtgcaatttcgttaacttgttcttgag 184  Q
     |||||||||| | ||||||||||| ||||||||||| ||| ||||| |  ||| |||||||||    
T  48666794 gcccacaaaaatgtgacttgagaatccaataacccatatgctatttcatacactagttcttgag 48666857  T

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Target: chr1; HSP #4
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 48652646 - 48652726
Alignment:
Q  18 tgaagaatgagcaagtacttgttcttgtggactccatttcactacttttcctctcccacttgtttcctccaagaagccatc 98  Q
    ||||| ||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||| ||||| |||||    
T  48652646 tgaaggatgagcaagtacttgttcttgtggactccattttacaacttttcctctctcacttgtttcctctaagaacccatc 48652726  T

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Target: chr1; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 11546756 - 11546857
Alignment:
Q  17 atgaagaatgagcaagtacttgttcttgtggactccatttcactacttttcctctcccacttgtttcctccaagaagccatcggggaaaacatgttgttt 116  Q
    |||||| |||||| | ||||| ||||||||||||||||||||| |||||||||||| || |||||||||| ||||| ||||  || |||||||||| |||    
T  11546756 atgaaggatgagccaatacttcttcttgtggactccatttcacaacttttcctctctcatttgtttcctctaagaacccatttggcaaaacatgttcttt 11546855  T
Q  117 ta 118  Q
    ||    
T  11546856 ta 11546857  T

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Target: chr1; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 113 - 182
Target Start/End: Complemental strand, 48618687 - 48618618
Alignment:
Q  113 gttttaatacccacaaaaacgagacttgagaattcaataacccatgtgcaatttcgttaacttgttcttg 182  Q
    |||||||||||||||||||||| |||||||||| ||||||||||| ||||||||| || |||||||||||    
T  48618687 gttttaatacccacaaaaacgatacttgagaatccaataacccatatgcaatttcattcacttgttcttg 48618618  T

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Target: chr1; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 48652768 - 48652839
Alignment:
Q  113 gttttaatacccacaaaaacgagacttgagaattcaataacccatgtgcaatttcgttaacttgttcttgag 184  Q
    |||||||||||||||||||||| |||||||||| ||||||||||| ||| ||||| || |||||||||||||    
T  48652768 gttttaatacccacaaaaacgatacttgagaatccaataacccatatgctatttcattcacttgttcttgag 48652839  T

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Target: chr1; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 48618809 - 48618729
Alignment:
Q  18 tgaagaatgagcaagtacttgttcttgtggactccatttcactacttttcctctcccacttgtttcctccaagaagccatc 98  Q
    ||||| |||||||||||||| ||||||||||||||| ||||| |||||||||||| ||||| || |||| ||||| |||||    
T  48618809 tgaaggatgagcaagtacttcttcttgtggactccagttcaccacttttcctctctcacttattccctctaagaacccatc 48618729  T

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Target: chr1; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 48584871 - 48585040
Alignment:
Q  18 tgaagaatgagcaagtacttgttcttgtggactccatttcactacttttcctctcccacttgtttcctccaagaagccatcggggaaaacatgttgttt- 116  Q
    ||||| |||||||||||| | | ||||||||||||| | ||| ||||| |||||| || ||||||||||||| ||  |||| || ||||||    | ||     
T  48584871 tgaaggatgagcaagtacatctacttgtggactccactccaccactttccctctctcatttgtttcctccaaaaaatcatcaggcaaaacaccaggattg 48584970  T
Q  117 --taatacccacaaaaacgagacttgagaattcaataacccatgtgcaatttcgttaacttgttcttgag 184  Q
      ||||  ||||||||||||||||||||||||||||||||| | | ||||||| || | |||||||||||    
T  48584971 cttaatgaccacaaaaacgagacttgagaattcaataacccgtatacaatttcattcatttgttcttgag 48585040  T

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Target: chr1; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 48628452 - 48628531
Alignment:
Q  19 gaagaatgagcaagtacttgttcttgtggactccatttcactacttttcctctcccacttgtttcctccaagaagccatc 98  Q
    |||| |||| |||||||||  |||||||||||||| ||||| |||||||||| | ||||||||||||||||||| |||||    
T  48628452 gaaggatgatcaagtacttcctcttgtggactccacttcaccacttttcctcactcacttgtttcctccaagaacccatc 48628531  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 182
Target Start/End: Original strand, 11546879 - 11546948
Alignment:
Q  113 gttttaatacccacaaaaacgagacttgagaattcaataacccatgtgcaatttcgttaacttgttcttg 182  Q
    |||||| |||||||||||| || ||||||||||  |||||||||| ||| ||||| || |||||||||||    
T  11546879 gttttagtacccacaaaaatgatacttgagaatctaataacccatatgctatttcattcacttgttcttg 11546948  T

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Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 19666165 - 19666091
Alignment:
Q  18 tgaagaatgagcaagtacttgttcttgtggactccatttcactacttttcctctcccacttgtttcctccaagaa 92  Q
    ||||| |||||||||||||| ||||||||||||||| ||||| |||||||||||| || |||||||||| |||||    
T  19666165 tgaaggatgagcaagtacttcttcttgtggactccaattcaccacttttcctctctcatttgtttcctctaagaa 19666091  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 182
Target Start/End: Complemental strand, 19666043 - 19665974
Alignment:
Q  113 gttttaatacccacaaaaacgagacttgagaattcaataacccatgtgcaatttcgttaacttgttcttg 182  Q
    |||||| |||||||||||| || || | ||||| ||||||||||||||||||||| || |||||||||||    
T  19666043 gttttagtacccacaaaaatgaaacattagaatccaataacccatgtgcaatttcattcacttgttcttg 19665974  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 27223491 - 27223564
Alignment:
Q  19 gaagaatgagcaagtacttgttcttgtggactccatttcactacttttcctctcccacttgtttcctccaagaa 92  Q
    |||| |||||| ||||||||||||||||||| ||| ||||| ||||||||||||||||| |||||||| |||||    
T  27223491 gaaggatgagctagtacttgttcttgtggacaccacttcaccacttttcctctcccactagtttcctcgaagaa 27223564  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 27227681 - 27227761
Alignment:
Q  18 tgaagaatgagcaagtacttgttcttgtggactccatttcactacttttcctctcccacttgtttcctccaagaagccatc 98  Q
    ||||| |||||| ||||||||||||||||||| ||| ||| | ||||||||| ||||||| |||||||||||||| |||||    
T  27227681 tgaaggatgagctagtacttgttcttgtggacaccacttcgcaacttttcctttcccactagtttcctccaagaacccatc 27227761  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 114 - 184
Target Start/End: Original strand, 27227816 - 27227886
Alignment:
Q  114 ttttaatacccacaaaaacgagacttgagaattcaataacccatgtgcaatttcgttaacttgttcttgag 184  Q
    ||||| || ||||||||| ||||||||||||| |||||| ||||  |||||||| || |||||||||||||    
T  27227816 ttttagtatccacaaaaaggagacttgagaatccaataatccataggcaatttcattcacttgttcttgag 27227886  T

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