View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14798_low_4 (Length: 588)
Name: NF14798_low_4
Description: NF14798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14798_low_4 |
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| [»] scaffold0272 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 330
Target Start/End: Original strand, 33721015 - 33721326
Alignment:
| Q |
19 |
taatgttgtctctcaactctagtttctcagctaaccagctttcttcctctaattagtgctatagattagcatagaaatgaaagtatatggagtagcaatc |
118 |
Q |
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| T |
33721015 |
taatgttgtctctcaactctagtttctcagctaaccagctttcttcctctaattagtgctatagattagcatagaaatgaaagtatatggagtagcaatc |
33721114 |
T |
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| Q |
119 |
tttgataaattaatagaattatgataggaatcattgttttgggagtttttatacgacaaaaatcggagcatgaatgtataaaatcggagcacaattttgt |
218 |
Q |
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| T |
33721115 |
tttgataaattaatagaattatgataggaatcattgctgtgggagtttttataagacaaaaatcggggcatgaatgtataaaatcggagcacaatcttgt |
33721214 |
T |
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| Q |
219 |
ggataacggtcaattcctgctgtgtacgaactgcaaattggggcacgaaatttctcaggacatgaccactattcaaggcttcgttcttcatgttttgagg |
318 |
Q |
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| T |
33721215 |
ggataacggtcaattcctactgtgtacgaactgcaaatcggggcacgaaatttctcaggacatgaccactattcaaggcttcgttcttcatgttttgagg |
33721314 |
T |
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| Q |
319 |
tgacttccattc |
330 |
Q |
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| T |
33721315 |
tgacttccattc |
33721326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 63 - 159
Target Start/End: Original strand, 21219536 - 21219634
Alignment:
| Q |
63 |
tcctctaattagtgctatagattagcatagaaatgaaagtatatgga--gtagcaatctttgataaattaatagaattatgataggaatcattgttttg |
159 |
Q |
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| T |
21219536 |
tcctctaattattgctatagattagcctagaaatgaaaatgtatgctttgtagcaatctttgataaagtaatagaattatgataggaattattgttttg |
21219634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 133; Significance: 7e-69; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 339 - 535
Target Start/End: Complemental strand, 7462 - 7263
Alignment:
| Q |
339 |
tggcattggattcacttatgtctttgatcttt--ctttctttcaaatatgttgtttatctctttctttttccaaagcaccaggaccttacagtccaattt |
436 |
Q |
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| T |
7462 |
tggcattggattcacttgtgtctttgatatttttctttcttttaaatcttttgtttatctctttctttttccaaagcaccagaacctaacagtccaattt |
7363 |
T |
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| Q |
437 |
tgagaccaactcctattagtg-cagttcactagtaacaattacataagaacactcaataaatgtcctcaaaccgatgggcaaagtgaggtcctcaataaa |
535 |
Q |
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| T |
7362 |
ttagaccaattcctattagtgtcagttcactagtaacaattgcataagaacactcaataaatgtcctcaaacctatgggaaaagtgaggtcctcaataaa |
7263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 200 - 324
Target Start/End: Original strand, 24944790 - 24944914
Alignment:
| Q |
200 |
aatcggagcacaattttgtggataacggtcaattcctgctgtgtacgaactgcaaattggggcacgaaatttctcaggacatgaccactattcaaggctt |
299 |
Q |
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||||||||||| ||||||||||||| ||||||||| | |||||||| ||| || | ||||||| |||||| || ||| || | || |||||||||||| |
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| T |
24944790 |
aatcggagcacgattttgtggataaaggtcaattcgtactgtgtacaaacaacagttcggggcacaaaatttttcgggatataagcattattcaaggctt |
24944889 |
T |
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| Q |
300 |
cgttcttcatgttttgaggtgactt |
324 |
Q |
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| T |
24944890 |
cgctcttcatgttgtgaggtgactt |
24944914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 114 - 150
Target Start/End: Complemental strand, 21657533 - 21657497
Alignment:
| Q |
114 |
caatctttgataaattaatagaattatgataggaatc |
150 |
Q |
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| T |
21657533 |
caatctttgataaaataatagaattgtgataggaatc |
21657497 |
T |
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