View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14798_low_8 (Length: 474)
Name: NF14798_low_8
Description: NF14798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14798_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 397; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 19 - 465
Target Start/End: Complemental strand, 13960351 - 13959903
Alignment:
| Q |
19 |
gttactcggagtgcaactgcttgatgtttctctggtcctgctgtgttttcgatgctgatatcctttgccatgaagttttcaccattaacagctgcaattc |
118 |
Q |
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| T |
13960351 |
gttactcggagtgcaactgcttgatgtttctctggtcctgctgtgttttcgatgctgatatcctttgccatgaagttttcaccattaacacctgcaattc |
13960252 |
T |
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| Q |
119 |
atatccaaattaataaaataggtttcgtagtaatggtggttgtgatcataatttatgatattgaggagaatcacggtcaaatccaacaataagaccttaa |
218 |
Q |
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| T |
13960251 |
atatccaaattaataaaataggtttcttagtaatggtggttgtgatcataatttatgatattgaggagaatcacggtcaaatccaacaataagaccttaa |
13960152 |
T |
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| Q |
219 |
tcatgtcgcgttatgattttggcagcataaagaatcattatgtcgcaatccaggttaacatcgcccacatttatttaaaattctatgaaaaaccacctta |
318 |
Q |
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| T |
13960151 |
tcatgtcgcgttatgattttggcagcataaagaatcattatgtcgcaatccagattaacatcgcccacatttatttaaaattctacgaaaaaccacctta |
13960052 |
T |
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| Q |
319 |
atattgacgttgactattgaaagtaaaagtt--tagtttttcttgtaacgtctaagactacgacttgatcggtgtaagtttgacataaacnnnnnnnctg |
416 |
Q |
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| T |
13960051 |
atattgacgttgactattgaaagtaaaagtttatagtttttcttgtaacgtctaagactatgacttgatcggtgtaagtttgacataaacaaaaaaactg |
13959952 |
T |
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| Q |
417 |
atatttgtggctcaaaatcgatcaactcaattgtttatcctatattctt |
465 |
Q |
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| T |
13959951 |
atatttgtggctcaaaatcgatcaactcaattgtttatcctatattctt |
13959903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 193 - 406
Target Start/End: Complemental strand, 13971636 - 13971421
Alignment:
| Q |
193 |
ggtcaaatccaacaataagaccttaatcatgtcgcgttatgattttggcagcataaagaatcattatgtcgcaatccaggttaacatcgcccacatttat |
292 |
Q |
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|||||||||||| ||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||| | | | ||||||| |||||| |
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| T |
13971636 |
ggtcaaatccaaaaataagaccttaatcatgtttcgttatgattttgacaacataaagaatcattatgtcgcaatcttgataattgtcgcccaaatttat |
13971537 |
T |
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| Q |
293 |
ttaaaattctatgaaaaaccaccttaatattgacgttgactattgaaagtaaaagtt--tagtttttcttgtaacgtctaagactacgacttgatcggtg |
390 |
Q |
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| T |
13971536 |
ttaaaattctatgacagacaaccttaatattgacattgactattgaaagtaaaagtttatagtttttcttgtaacgtctaagattatgacttgattggtg |
13971437 |
T |
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| Q |
391 |
taagtttgacataaac |
406 |
Q |
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| T |
13971436 |
taagtttgacataaac |
13971421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 13967515 - 13967421
Alignment:
| Q |
19 |
gttactcggagtgcaactgcttgatgtttctctggtcctgctgtgttttcgatgctgatatcctttgccatgaagttttcaccattaacagctgc |
113 |
Q |
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||||||||||| ||||||||||||| ||| | || |||||||||||| |||| || ||||||||||||||||||||| ||||||||||| |||| |
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| T |
13967515 |
gttactcggagggcaactgcttgatttttatttgttcctgctgtgttctcgaagccaatatcctttgccatgaagtttgcaccattaacacctgc |
13967421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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