View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14798_low_9 (Length: 474)
Name: NF14798_low_9
Description: NF14798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14798_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 14 - 458
Target Start/End: Complemental strand, 2484098 - 2483655
Alignment:
| Q |
14 |
aaacaaaccattctgagtggatcgcaatattttttcttattaccaaaccgcctctcaattaatccaataacttcaaatgcaattgtggtagcaaattcca |
113 |
Q |
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|||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2484098 |
aaacaagcctttctgagtggatcgtaatattttttcttattaccaaaccgcctctcaattaatccaataacttcaaatgcaattgtggtagcaaattcca |
2483999 |
T |
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| Q |
114 |
aattgtatactcaatcaaactctttttatttaaaacgacaactttctcaatccaaatgttgcaagcggtgcctattttaagaagaaaccaaaattgcaaa |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2483998 |
aattgtatactcaatcaaactctttttatttaaaacgacaactttctcaatccaaatgttgcaagcggtgcctattttaagaagaaaccaaaattgcaat |
2483899 |
T |
|
| Q |
214 |
cacaagatatgccacttgctgcacatgaagaaactcaataatcaatttgtaatgcctctgaatatttttaacaaactaagaaaaccaaaataacaaatta |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2483898 |
t-caagatatgccacttgctgcacatgaagaaactcaataatcaagttgtaatgcctctgaagatttttaacaaactaagaaaaccaaaataacaaatta |
2483800 |
T |
|
| Q |
314 |
agaaaaccaaatcactatcaatataacgaatattcaaaagacaaacctaaaacaatcccaaacttttggaattcgacggcagaagcgattagtggttcaa |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2483799 |
agaaaaccaaatcactatcaatataacgaatattcaaaagacaaaccaaaaacaatcccaaacttttggaattcgacggcagaagcgattagtggttcaa |
2483700 |
T |
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| Q |
414 |
gcggatcgaaccatgctcttcataccatgttaacaatacaaatac |
458 |
Q |
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| T |
2483699 |
gcggatcgaaccatgctcttgataccatgttaacaatacaaatac |
2483655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 296 - 458
Target Start/End: Complemental strand, 2479359 - 2479191
Alignment:
| Q |
296 |
aaccaaaataacaaattaagaaaaccaaatcactatcaatata----acgaatattcaaaagacaaacctaaaacaatcccaaacttttggaattcgacg |
391 |
Q |
| |
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|||||| ||||||||| |||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
2479359 |
aaccaacataacaaatcaagagaactaaatcactatcaatatatataacgaatattcaaaagacaaaccaaaaacaatcccaagcttttggaattcgacg |
2479260 |
T |
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| Q |
392 |
gcagaagcgattagtggttc--aagcggatcgaaccatgctcttcataccatgttaacaatacaaatac |
458 |
Q |
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| ||| ||||||||||||| ||| ||||| ||||||||||||||||| |||||||||| ||| |||| |
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| T |
2479259 |
gtggaaacgattagtggttcaaaagaggatcaaaccatgctcttcatacaatgttaacaacacatatac |
2479191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 438
Target Start/End: Original strand, 1175437 - 1175506
Alignment:
| Q |
369 |
tcccaaacttttggaattcgacggcagaagcgattagtggttcaagcggatcgaaccatgctcttcatac |
438 |
Q |
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| T |
1175437 |
tcccaaacttttgggattcgacagcggaagcgactagtggttcaagacgatcaaaccatactcttgatac |
1175506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 43 - 188
Target Start/End: Original strand, 17927479 - 17927621
Alignment:
| Q |
43 |
ttttttcttattaccaaaccgcctctcaattaatccaataacttcaaatgcaattgtggtagcaaattccaaattgtatactcaatcaaactctttttat |
142 |
Q |
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||||||||||||||| | | |||||| ||||||||||||||||||||| ||| | ||||||||||||||||||||||||||| ||| ||||| |||| | |
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| T |
17927479 |
ttttttcttattaccgatctgcctcttaattaatccaataacttcaaacacaactatggtagcaaattccaaattgtatactcgatccaactcctttttt |
17927578 |
T |
|
| Q |
143 |
ttaaaacgacaactttctcaatccaaatgttgcaagcggtgcctat |
188 |
Q |
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| T |
17927579 |
tt--aacgacaattttctcaatcc-aatgttgcaagtggtgtctat |
17927621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 423
Target Start/End: Original strand, 3775671 - 3775795
Alignment:
| Q |
300 |
aaaataacaaattaagaaaaccaaatcactatcaatataacgaatattcaaaagacaaacctaaaacaatcccaaacttttggaattcgacggcagaagc |
399 |
Q |
| |
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|||||||||| || || |||||||||| || ||||||| ||| |||||||| |||| | || |||||||||||||||| ||| |||| ||||||| |
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| T |
3775671 |
aaaataacaagttgggagaaccaaatcatgattaatataatcaatcttcaaaaggcaaatcaaacacaatcccaaactttttgaaatcgataacagaagc |
3775770 |
T |
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| Q |
400 |
gattagtggttcaa-gcggatcgaa |
423 |
Q |
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|| |||||||||| |||||||||| |
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| T |
3775771 |
gacaagtggttcaaggcggatcgaa |
3775795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 457
Target Start/End: Complemental strand, 24135127 - 24135082
Alignment:
| Q |
412 |
aagcggatcgaaccatgctcttcataccatgttaacaatacaaata |
457 |
Q |
| |
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||||||||| ||||| |||||| ||||||| ||||||||||||||| |
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| T |
24135127 |
aagcggatcaaaccacgctcttgataccatcttaacaatacaaata |
24135082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 451
Target Start/End: Complemental strand, 3950697 - 3950617
Alignment:
| Q |
372 |
caaacttttggaattcgacggcagaagcgattagtggttcaag-cggatcgaaccatgctcttcataccatgttaacaata |
451 |
Q |
| |
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|||||||||| |||||| ||||||| || ||||||||||| |||||| ||||||||| | ||||||||||||||||| |
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| T |
3950697 |
caaacttttgagattcgatagcagaagtgacaagtggttcaaggcggatcaaaccatgctttcgataccatgttaacaata |
3950617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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