View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14799_high_2 (Length: 348)

Name: NF14799_high_2
Description: NF14799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14799_high_2
NF14799_high_2
[»] chr7 (1 HSPs)
chr7 (1-344)||(7235528-7235870)
[»] chr5 (1 HSPs)
chr5 (263-324)||(29490048-29490109)
[»] chr3 (6 HSPs)
chr3 (270-324)||(28423150-28423204)
chr3 (269-320)||(6069083-6069134)
chr3 (270-324)||(28718703-28718757)
chr3 (269-306)||(6113430-6113467)
chr3 (269-306)||(6120322-6120359)
chr3 (270-342)||(797355-797427)
[»] chr6 (1 HSPs)
chr6 (270-310)||(15002295-15002335)
[»] chr2 (1 HSPs)
chr2 (263-324)||(20657350-20657411)


Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 7235528 - 7235870
Alignment:
Q  1 atgctgattgtaaacccactctatgcttgtttcctataatcaaaaggtgcattgaaaatcaatgtaaatgtgtgccaacgggtttcgctgaacctatgag 100  Q
    ||||||||||| ||  || |||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||| ||||| |  ||||||||||||    
T  7235528 atgctgattgtgaatacattctatgcttgtttcctataatcaaaaggtgcattcacaatcattgtaaatgtgtgccaatgggttccattgaacctatgag 7235627  T
Q  101 tatcatacccaacgtagtacacaaatttcatattataaattattagttgttggagtaacaaaagatatacaccatataccttttgtaagaatatttcacg 200  Q
    || ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7235628 taccatacccaacggagtacacaaatttcatattataaataattagttgttggagtaacaaaagatatacacaatataccttttgtaagaatatttcacg 7235727  T
Q  201 agctgtcttttatttatttattgttgatacccaataaatttgnnnnnnnactttcacaaaccttatgactttgtactctaagatgatgataatgaaataa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7235728 agctgtcttttatttatttattgttgatacccaataaatttgtttttttactttcacaaaccttatgactttgtactctaagatgatgataatgaaataa 7235827  T
Q  301 aataaggcagcaaataatattattaatcttttcttcttctctct 344  Q
    |||||||||||||||||||||||| |  ||||||||||||||||    
T  7235828 aataaggcagcaaataatattatt-acattttcttcttctctct 7235870  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 263 - 324
Target Start/End: Original strand, 29490048 - 29490109
Alignment:
Q  263 ttatgactttgtactctaagatgatgataatgaaataaaataaggcagcaaataatattatt 324  Q
    ||||| |||||||||||||||| |||||| |||||| ||||||||||||||||||| |||||    
T  29490048 ttatggctttgtactctaagattatgatattgaaatgaaataaggcagcaaataatcttatt 29490109  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 270 - 324
Target Start/End: Complemental strand, 28423204 - 28423150
Alignment:
Q  270 tttgtactctaagatgatgataatgaaataaaataaggcagcaaataatattatt 324  Q
    |||||||||| | | |||| |||||||||||||||||||||||||||||||||||    
T  28423204 tttgtactcttacaggatggtaatgaaataaaataaggcagcaaataatattatt 28423150  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 269 - 320
Target Start/End: Original strand, 6069083 - 6069134
Alignment:
Q  269 ctttgtactctaagatgatgataatgaaataaaataaggcagcaaataatat 320  Q
    |||||||||||||||||||| ||||||||| |||||||  ||||||||||||    
T  6069083 ctttgtactctaagatgatgttaatgaaatgaaataagatagcaaataatat 6069134  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 324
Target Start/End: Complemental strand, 28718757 - 28718703
Alignment:
Q  270 tttgtactctaagatgatgataatgaaataaaataaggcagcaaataatattatt 324  Q
    |||||||||||||||||| ||||| |||||||||||| ||  |||||| ||||||    
T  28718757 tttgtactctaagatgatcataatcaaataaaataagtcaaaaaataaaattatt 28718703  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 306
Target Start/End: Original strand, 6113430 - 6113467
Alignment:
Q  269 ctttgtactctaagatgatgataatgaaataaaataag 306  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  6113430 ctttgtactctaagatgatggtaatgaaatcaaataag 6113467  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 306
Target Start/End: Original strand, 6120322 - 6120359
Alignment:
Q  269 ctttgtactctaagatgatgataatgaaataaaataag 306  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  6120322 ctttgtactctaagatgatggtaatgaaatcaaataag 6120359  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 342
Target Start/End: Original strand, 797355 - 797427
Alignment:
Q  270 tttgtactctaagatgatgataatgaaataaaataaggcagcaaataatattattaatcttttcttcttctct 342  Q
    |||||||||||| || |||| |||||||| ||||||| ||||||  ||||||||| |  || |||||||||||    
T  797355 tttgtactctaaaataatgacaatgaaatgaaataagacagcaacaaatattatttagattatcttcttctct 797427  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 270 - 310
Target Start/End: Original strand, 15002295 - 15002335
Alignment:
Q  270 tttgtactctaagatgatgataatgaaataaaataaggcag 310  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  15002295 tttgtactctaagataatgataatgaaataaaataaggcag 15002335  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 324
Target Start/End: Complemental strand, 20657411 - 20657350
Alignment:
Q  263 ttatgactttgtactctaagatgatgataatgaaataaaataaggcagcaaataatattatt 324  Q
    ||||||| | |||||||||||||||| |||  ||||||||| |||||| |||||||| ||||    
T  20657411 ttatgacgtggtactctaagatgatggtaaaaaaataaaattaggcagaaaataataatatt 20657350  T

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