View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14799_low_1 (Length: 957)
Name: NF14799_low_1
Description: NF14799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14799_low_1 |
 | |
|
| [»] scaffold0018 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 830; Significance: 0; HSPs: 27)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 830; E-Value: 0
Query Start/End: Original strand, 12 - 940
Target Start/End: Complemental strand, 5423432 - 5422507
Alignment:
| Q |
12 |
catcatcagtggagaatttaaagcatcttgagtctatggacttgtcaaacaactccttgaatggagagattcctcaagggctttcaagtctatctttcct |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5423432 |
catcatcagtggagaatttaaagcatcttgagtgtatggacttgtcaaacaactccttgaatggagagattcctcaagggctttcaagtctatctttcct |
5423333 |
T |
|
| Q |
112 |
agcatacatgaacctctcgttcaatcacctcgtgggtcgaattcctttgggtactcaaattcaatcatttgatgcagattccttcaaagggaatgaaggg |
211 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
5423332 |
agcatatatgaacctctcgttcaatcacctcgtggggcgaattcctttgggtactcaaattcaatcatttgatgtagactccttcaaagggaatgaaggg |
5423233 |
T |
|
| Q |
212 |
ttatgtggacctccactgaccaccaattgcgacgatggtggagtgcaagggctgccaccaccagcatccgagttatctccttgtcataatgacagttcaa |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5423232 |
ttatgtggacctccactgaccaccaattgcgacgatggcggagtgcaagggctgccaccaccagcatccgagttatctccttgtcataatgacagttcaa |
5423133 |
T |
|
| Q |
312 |
ttgattggaatttcttaagtgtggagttgggatttatttttggccttggaattttcatcctccccctggtttgcttgatgaaatggagtttgaggtaatc |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||| || |
|
|
| T |
5423132 |
ttgattggaatttcttaagtgtggagttgggatttatttttggccttggaattttcatcctcccccttgtttgcttgatgaaatggaggttgtggtattc |
5423033 |
T |
|
| Q |
412 |
caatcatgcagatgaaatgcttcacaggttcatcccccagctagattttgtgtatgaacagcatgaagggaagaggtgtagatctctatggtggaggtac |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5423032 |
caatcatgcagatgaaatgcttcacaggttcatcccccagctagattttgtgtatgaacagcatgaagggaagaggtgtagatctctaaggtggaggtac |
5422933 |
T |
|
| Q |
512 |
tagtcgcttaactcttggtttcgaagctatatgtccataaattggactcacatcaatggtgcaagcaaaacatgactcaggtgtggatccattattcgta |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5422932 |
tagtcgcttaactcttggtttcgaagctatatgtccataaattggactcacatcaatggtgcaagcaaaacatgactcaggtgtggatccattattcgta |
5422833 |
T |
|
| Q |
612 |
ttcctcccttgttcactaggactctttttcttctcatgttagtattgttgaagcagatcgaatctgatagctatctgatagcttaaaattgcagttagtt |
711 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
5422832 |
ttcctcccttgttcactaggactctttttcttctcatgttagtattgttgaagcagaaggaatctgatagctatctgatagcttaaaattgcagttag-t |
5422734 |
T |
|
| Q |
712 |
ttgttagctattttcagaaataatcactatgtattagagtgtatgcgagtttctctgctaccatttcagttctatatataccagttatatatctacttca |
811 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5422733 |
ttgttagctatttttagaaataatcactatgtattaaagtgtatgcgagtttctctgctaccatttcagttctatatataccagttatatatctacttca |
5422634 |
T |
|
| Q |
812 |
aaatttagtttagtttcatcattctctctgcattttgtccttatgaaggaactttggccacattatgtcattgcaaattatttctcattaattgtgaaac |
911 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||| | |
|
|
| T |
5422633 |
aaagttagtttagtttcatcattctctctgcattttgtccttatgaatgaactttggccacatta--tcattgcatattatttctcattaattgtgaagc |
5422536 |
T |
|
| Q |
912 |
aatgtcaacacaaaattagaaaatgaaat |
940 |
Q |
| |
|
|||||||||||||| |||||||||||||| |
|
|
| T |
5422535 |
aatgtcaacacaaagttagaaaatgaaat |
5422507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 12 - 775
Target Start/End: Original strand, 5379294 - 5380047
Alignment:
| Q |
12 |
catcatcagtggagaatttaaagcatcttgagtctatggacttgtcaaacaactccttgaatggagagattcctcaagggctttcaagtctatctttcct |
111 |
Q |
| |
|
|||||||||||| |||||| ||| ||||||||| |||||| ||||||||||| || |||||||| ||||| ||||||| |||||||||| ||| |||||| |
|
|
| T |
5379294 |
catcatcagtggggaatttgaagaatcttgagtgtatggatttgtcaaacaattctttgaatggtgagatccctcaagagctttcaagtatatatttcct |
5379393 |
T |
|
| Q |
112 |
agcatacatgaacctctcgttcaatcacctcgtgggtcgaattcctttgggtactcaaattcaatcatttgatgcagattccttcaaagggaatgaaggg |
211 |
Q |
| |
|
| ||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5379394 |
tgaatatatgaacctctcgttcaatcacctggtgggtcgaattcctttgggcactcaaattcaatcatttgatgcagattccttcaaagggaatgaaggg |
5379493 |
T |
|
| Q |
212 |
ttatgtggacctccactgaccaccaattgcgacgatggtggagtgcaagggctgccaccaccagcatccgagttatctccttgtcataatgacagttcaa |
311 |
Q |
| |
|
||||| |||||||||||||||| ||||||| || ||| ||||||||||||| | |||||||||||||||| || ||||||||||| ||||| |
|
|
| T |
5379494 |
ttatgcggacctccactgaccaacaattgcaacaatgatggagtgcaagggttt---------gcatccgagttatctcattctcataatgacaattcaa |
5379584 |
T |
|
| Q |
312 |
ttgattggaatttcttaagtgtggagttgggatttatttttggccttggaattttcatcctccccctggtttgcttgatgaaatggagtttgaggtaatc |
411 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||| ||| |||| | |
|
|
| T |
5379585 |
ttgattggaatctcttaagtgtggagttgggatttatttttggctttggaattttcatcctcccccttatttggttgatgaaatggaggttgtggtattt |
5379684 |
T |
|
| Q |
412 |
caatcatgcagatgaaatgcttcacaggttcatcccccagctagattttgtgtatgaacagcatgaagggaagaggtgtagatctctatggtggaggtac |
511 |
Q |
| |
|
||| |||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
5379685 |
caaacatgtcgatgaaatgctttacaggttcctcccccagctagattttgtgtatgaacagcaggaagggaagaggtatagatctctaaggtggaggtac |
5379784 |
T |
|
| Q |
512 |
tagtcgcttaactcttggtttcgaagctatatgtccataaattggactcacatcaatggtgcaagcaaaacatgactcaggtgtggatccattattcgta |
611 |
Q |
| |
|
||||| ||||||||||| ||| |||||||||||||||||| ||| |||||||| || |||||||||||||||||||||| |||||||||||| ||| ||| |
|
|
| T |
5379785 |
tagtcacttaactcttgattttgaagctatatgtccataatttgtactcacataaagggtgcaagcaaaacatgactcaagtgtggatccatcatttgta |
5379884 |
T |
|
| Q |
612 |
ttcctcccttgttcactaggactctttttcttctcatgttagtattgttgaagcagatcgaatctgatagctatctgatagcttaaaattgcagttagtt |
711 |
Q |
| |
|
||| | |||||||||||||| || |||||||| ||| ||||||||||||||| | | |||||||||| || ||||||| || |||| |||||| | |
|
|
| T |
5379885 |
ttcgttccttgttcactaggccttgttttcttcgcattttagtattgttgaagaaatatgtatctgatagcgatgtgatagcctacgattgtagttag-t |
5379983 |
T |
|
| Q |
712 |
ttgttagctattttcagaaataatcactatgtattagagtgtatgcgagtttctctgctaccat |
775 |
Q |
| |
|
| ||||| ||||||| ||||||||||| ||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
5379984 |
tcgttagaaattttcaaaaataatcactctgtattatagtgtatgctagtttctctgctaccat |
5380047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 15 - 525
Target Start/End: Complemental strand, 5346112 - 5345602
Alignment:
| Q |
15 |
catcagtggagaatttaaagcatcttgagtctatggacttgtcaaacaactccttgaatggagagattcctcaagggctttcaagtctatctttcctagc |
114 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
5346112 |
catcagtggagaatttaaagaatcttgagtgtatggacttgtcaaacaactccttgaatggagagatccctcaagagctttcaagtctatctttcctagc |
5346013 |
T |
|
| Q |
115 |
atacatgaacctctcgttcaatcacctcgtgggtcgaattcctttgggtactcaaattcaatcatttgatgcagattccttcaaagggaatgaagggtta |
214 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
5346012 |
atatatgaacctctcgttcaatcacctagtgggtcgaattcctttgggtactcaaattcaaacatttgatgtagattccttcaaaggaaatgaagggtta |
5345913 |
T |
|
| Q |
215 |
tgtggacctccactgaccaccaattgcgacgatggtggagtgcaagggctgccaccaccagcatccgagttatctccttgtcataatgacagttcaattg |
314 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||| | |||| || ||||| ||||| |||| |||||| ||||||| || |||||||||||||||||||| |
|
|
| T |
5345912 |
tgtggacctctactgagcaccaattgcgacgatgatagagttcatgggcttccaccgccagaatccgaattatctcattttcataatgacagttcaattg |
5345813 |
T |
|
| Q |
315 |
attggaatttcttaagtgtggagttgggatttatttttggccttggaattttcatcctccccctggtttgcttgatgaaatggagtttgaggtaatccaa |
414 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||| |||||| ||| |||| ||||| |
|
|
| T |
5345812 |
attggaacttcttaagtgtggagttgggatttatttttggctttggaattttcctcctcccccttatttgcttgatgagatggaggttgtggtattccaa |
5345713 |
T |
|
| Q |
415 |
tcatgcagatgaaatgcttcacaggttcatcccccagctagattttgtgtatgaacagcatgaagggaagaggtgtagatctctatggtggaggtactag |
514 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||| ||||| |||||||||| ||||||| |||||| |
|
|
| T |
5345712 |
acatgcagatgaaatgctttacaggttcatcccccagctagattttgtgtatgaacaacatcaagggatgaggtatagatctctaaggtggagatactag |
5345613 |
T |
|
| Q |
515 |
tcgcttaactc |
525 |
Q |
| |
|
|| |||||||| |
|
|
| T |
5345612 |
tcacttaactc |
5345602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 12 - 512
Target Start/End: Original strand, 5354949 - 5355449
Alignment:
| Q |
12 |
catcatcagtggagaatttaaagcatcttgagtctatggacttgtcaaacaactccttgaatggagagattcctcaagggctttcaagtctatctttcct |
111 |
Q |
| |
|
||||||| |||| |||||| ||| ||||||| ||| |||||||||||||||||||||| |||||| |||||||||||| |||||||||| ||| |||||| |
|
|
| T |
5354949 |
catcatcggtggggaatttgaagaatcttgaatctttggacttgtcaaacaactccttaaatggaaagattcctcaagagctttcaagtatatatttcct |
5355048 |
T |
|
| Q |
112 |
agcatacatgaacctctcgttcaatcacctcgtgggtcgaattcctttgggtactcaaattcaatcatttgatgcagattccttcaaagggaatgaaggg |
211 |
Q |
| |
|
| ||| ||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |||||||||||| ||||||||||||||||||| ||| || |
|
|
| T |
5355049 |
tgaatatatgaacctctcgttcaatcaccttgtgggacgaattccgttgggtactcaaatacaatcatttgatacagattccttcaaagggaacgaaagg |
5355148 |
T |
|
| Q |
212 |
ttatgtggacctccactgaccaccaattgcgacgatggtggagtgcaagggctgccaccaccagcatccgagttatctccttgtcataatgacagttcaa |
311 |
Q |
| |
|
||||||||||||||| |||||| ||||||| | |||| |||||||||||||| || ||||||||||| || ||||||| || ||||||||||||||||| |
|
|
| T |
5355149 |
ttatgtggacctccattgaccaacaattgcaatgatgatggagtgcaagggcaaccgccaccagcatctgaattatctcattctcataatgacagttcaa |
5355248 |
T |
|
| Q |
312 |
ttgattggaatttcttaagtgtggagttgggatttatttttggccttggaattttcatcctccccctggtttgcttgatgaaatggagtttgaggtaatc |
411 |
Q |
| |
|
| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||| |||| || |
|
|
| T |
5355249 |
tcgattggaatttcttaagtttggagttgggatttatttttggctttggaattttcatcctcccccttatttgcttgatgaaatggaggttgtggtattc |
5355348 |
T |
|
| Q |
412 |
caatcatgcagatgaaatgcttcacaggttcatcccccagctagattttgtgtatgaacagcatgaagggaagaggtgtagatctctatggtggaggtac |
511 |
Q |
| |
|
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||| |
|
|
| T |
5355349 |
caaacatgcagatgaaatgctttacaggttcatcccccagctagattttgtgtatgaacagcatgaagggaagaggtatagaactctgaggtggaggtac |
5355448 |
T |
|
| Q |
512 |
t |
512 |
Q |
| |
|
| |
|
|
| T |
5355449 |
t |
5355449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 151 - 525
Target Start/End: Original strand, 5363562 - 5363936
Alignment:
| Q |
151 |
aattcctttgggtactcaaattcaatcatttgatgcagattccttcaaagggaatgaagggttatgtggacctccactgaccaccaattgcgacgatggt |
250 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| | ||||| |||||| | |
|
|
| T |
5363562 |
aattcctttgggcactcaaattcaataatttgatgtagattccttcaaaggaaatgaagggttatgtggacctccactgaccaacgattgcaacgatgat |
5363661 |
T |
|
| Q |
251 |
ggagtgcaagggctgccaccaccagcatccgagttatctccttgtcataatgacagttcaattgattggaatttcttaagtgtggagttgggatttattt |
350 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
5363662 |
ggagtgcaagggctgccgacaccagcatccgagttatctcattctcataatgacagttcaattgactggagtttcttaagtgtggagttgggatttattt |
5363761 |
T |
|
| Q |
351 |
ttggccttggaattttcatcctccccctggtttgcttgatgaaatggagtttgaggtaatccaatcatgcagatgaaatgcttcacaggttcatccccca |
450 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||| |||||| ||| |||| ||||| |||||||||||||||| | ||||||| |||||||| |
|
|
| T |
5363762 |
ttgggtttggaattttcatcctcccccttatttgcttgatgagatggaggttgtggtattccaagcatgcagatgaaatgcattacaggttgatccccca |
5363861 |
T |
|
| Q |
451 |
gctagattttgtgtatgaacagcatgaagggaagaggtgtagatctctatggtggaggtactagtcgcttaactc |
525 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||| | |||||| ||||||| |
|
|
| T |
5363862 |
gctagattttgtgtatgaacagcatgaagggaagaggtatagaactctaaggtggagatgctagtcaattaactc |
5363936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 12 - 512
Target Start/End: Complemental strand, 5467735 - 5467235
Alignment:
| Q |
12 |
catcatcagtggagaatttaaagcatcttgagtctatggacttgtcaaacaactccttgaatggagagattcctcaagggctttcaagtctatctttcct |
111 |
Q |
| |
|
|||||||||||| |||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
5467735 |
catcatcagtggggaatttgaagaatcttgaatctatggacttgtcaaacaactccttgaatggagagattcctcaagggctttcaagtataagtttcct |
5467636 |
T |
|
| Q |
112 |
agcatacatgaacctctcgttcaatcacctcgtgggtcgaattcctttgggtactcaaattcaatcatttgatgcagattccttcaaagggaatgaaggg |
211 |
Q |
| |
|
| ||| ||||| || || |||| |||||| || || |||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| ||||| |
|
|
| T |
5467635 |
tgaatatatgaatctatcattcagtcacctggttgggcgaattcctttgggaactcaaattcaatcatttgatatagattcctttgaagggaataaaggg |
5467536 |
T |
|
| Q |
212 |
ttatgtggacctccactgaccaccaattgcgacgatggtggagtgcaagggctgccaccaccagcatccgagttatctccttgtcataatgacagttcaa |
311 |
Q |
| |
|
||||||||| ||||||| || | ||| || | ||| | |||| |||||| |||||||||||||||| || | ||| | || |||| ||||||| |
|
|
| T |
5467535 |
ttatgtggatctccactaacaaacaaatgtggcgacgatggaaatcaagggttgccaccaccagcatctgaaacacctcataccaattatgagagttcaa |
5467436 |
T |
|
| Q |
312 |
ttgattggaatttcttaagtgtggagttgggatttatttttggccttggaattttcatcctccccctggtttgcttgatgaaatggagtttgaggtaatc |
411 |
Q |
| |
|
||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||| || || ||| ||||||||||||||| ||| |||| | |
|
|
| T |
5467435 |
ttgattggagtttcttaagtatggagttgggatgtatttttggccttggaattttcatccttcctcttattttcttgatgaaatggaggttgtggtattt |
5467336 |
T |
|
| Q |
412 |
caatcatgcagatgaaatgcttcacaggttcatcccccagctagattttgtgtatgaacagcatgaagggaagaggtgtagatctctatggtggaggtac |
511 |
Q |
| |
|
||| | || ||||| || ||| ||| ||||||||||||||| ||||||||||||||||| ||| |||||||||||| |||| |||| || |||||||| |
|
|
| T |
5467335 |
caaacttgtcgatgacatactttacaagttcatcccccagcttgattttgtgtatgaacaacataaagggaagaggtatagaactctgaggcggaggtac |
5467236 |
T |
|
| Q |
512 |
t |
512 |
Q |
| |
|
| |
|
|
| T |
5467235 |
t |
5467235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 12 - 233
Target Start/End: Original strand, 5413049 - 5413270
Alignment:
| Q |
12 |
catcatcagtggagaatttaaagcatcttgagtctatggacttgtcaaacaactccttgaatggagagattcctcaagggctttcaagtctatctttcct |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5413049 |
catcatcagtggagaatttaaagcatcttgagtctatggacttgtcaaacaactccttgaatggagagattcctcaagggctttcaagtctatctttcct |
5413148 |
T |
|
| Q |
112 |
agcatacatgaacctctcgttcaatcacctcgtgggtcgaattcctttgggtactcaaattcaatcatttgatgcagattccttcaaagggaatgaaggg |
211 |
Q |
| |
|
|||||| ||||| ||||||||||||||||| || || ||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||| |
|
|
| T |
5413149 |
agcatatatgaatctctcgttcaatcacctagttggacgaattcctttgggtactcaaattcaaacatttgatgtagattcctttgcagggaatgaagga |
5413248 |
T |
|
| Q |
212 |
ttatgtggacctccactgacca |
233 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
5413249 |
ttgtgtggacctccactgacca |
5413270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 168; E-Value: 2e-89
Query Start/End: Original strand, 26 - 529
Target Start/End: Original strand, 5357077 - 5357580
Alignment:
| Q |
26 |
aatttaaagcatcttgagtctatggacttgtcaaacaactccttgaatggagagattcctcaagggctttcaagtctatctttcctagcatacatgaacc |
125 |
Q |
| |
|
||||| ||| ||||||||||||| ||||| |||||||| | ||| ||||||||||||||||||| |||||| ||| |||||| | | ||| | || | |
|
|
| T |
5357077 |
aatttgaagaatcttgagtctatagacttttcaaacaatttcttcaatggagagattcctcaagagctttctagtttatcttatatgggatatctaaatc |
5357176 |
T |
|
| Q |
126 |
tctcgttcaatcacctcgtgggtcgaattcctttgggtactcaaattcaatcatttgatgcagattccttcaaagggaatgaagggttatgtggacctcc |
225 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| || ||||||||| | ||| | |||||||||||||| || ||||||||||||| |||||||||||||| |
|
|
| T |
5357177 |
tctcgttcaatcacctagtggggcgaattccattaggtactcaagtccaaacctttgatgcagattcttttgaagggaatgaaggattatgtggacctcc |
5357276 |
T |
|
| Q |
226 |
actgaccaccaattgcgacgatggtggagtgcaagggctgccaccaccagcatccgagttatctccttgtcataatgacagttcaattgattggaatttc |
325 |
Q |
| |
|
|||||||| ||||||| ||||| |||| | || ||||||||||||| ||||||||| | ||||| || ||||| || ||||||||||||||||||||| |
|
|
| T |
5357277 |
actgaccagcaattgcagcgatgatggaatccaggggctgccaccacaagcatccgaatcatctcattctcataccgagagttcaattgattggaatttc |
5357376 |
T |
|
| Q |
326 |
ttaagtgtggagttgggatttatttttggccttggaattttcatcctccccctggtttgcttgatgaaatggagtttgaggtaatccaatcatgcagatg |
425 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||| ||||||| || || | ||| | | |||||||| ||| |||| ||||| |||| ||||| |
|
|
| T |
5357377 |
ttaagtgtggagttgggatttattttcggctttggagttttcattcttcctattattttatggggaaaatggaggttgtggtattccaaacatgtagatg |
5357476 |
T |
|
| Q |
426 |
aaatgcttcacaggttcatcccccagctagattttgtgtatgaacagcatgaagggaagaggtgtagatctctatggtggaggtactagtcgcttaactc |
525 |
Q |
| |
|
|||| ||| ||| |||||| ||| || |||||||||||||||||||||||||||||||||| ||| || || ||||||| |||| | || |||||| |
|
|
| T |
5357477 |
aaattctttacaagttcatatcccgacttgattttgtgtatgaacagcatgaagggaagaggtacagaactttaaggtggagatactgattgcataactc |
5357576 |
T |
|
| Q |
526 |
ttgg |
529 |
Q |
| |
|
|||| |
|
|
| T |
5357577 |
ttgg |
5357580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 12 - 488
Target Start/End: Original strand, 5502815 - 5503291
Alignment:
| Q |
12 |
catcatcagtggagaatttaaagcatcttgagtctatggacttgtcaaacaactccttgaatggagagattcctcaagggctttcaagtctatctttcct |
111 |
Q |
| |
|
||||||| |||| |||||| ||| |||| |||||||||||||| |||||||| | ||| || |||||||||||||||| |||||||||| |||||||| | |
|
|
| T |
5502815 |
catcatctgtggggaatttgaagaatctcgagtctatggacttttcaaacaatttcttcaaaggagagattcctcaagagctttcaagtttatctttcat |
5502914 |
T |
|
| Q |
112 |
agcatacatgaacctctcgttcaatcacctcgtgggtcgaattcctttgggtactcaaattcaatcatttgatgcagattccttcaaagggaatgaaggg |
211 |
Q |
| |
|
| || |||| ||||||||||| ||||| ||||| |||||||| || || |||||||| ||| | |||||||||||||| || |||| ||||||||| |
|
|
| T |
5502915 |
ggggtatctgaatctctcgttcaaccacctagtggggcgaattccattaggcactcaaatccaaacctttgatgcagattcttttgaaggaaatgaaggg |
5503014 |
T |
|
| Q |
212 |
ttatgtggacctccactgaccaccaattgcgacgatggtggagtgcaagggctgccaccaccagcatccgagttatctccttgtcataatgacagttcaa |
311 |
Q |
| |
|
|| ||||| ||||| |||||| |||||| ||| | ||| ||| ||||||||||| |||||||| || | ||||| || || ||||||||||| || |
|
|
| T |
5503015 |
ttgtgtggtcctcccatgaccaacaattgtagcgacgagggaaggcaggggctgccaccgccagcatctgaatcatctcattctcgtaatgacagtttaa |
5503114 |
T |
|
| Q |
312 |
ttgattggaatttcttaagtgtggagttgggatttatttttggccttggaattttcatcctccccctggtttgcttgatgaaatggagtttgaggtaatc |
411 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||| |||||| || ||||||||| || |||| || |
|
|
| T |
5503115 |
ttgattgggatttcttaagtgtggagttgggttttatttttggttttggaattttcattctcccccttatttgctggaagaaatggaggctgtggtattc |
5503214 |
T |
|
| Q |
412 |
caatcatgcagatgaaatgcttcacaggttcatcccccagctagattttgtgtatgaacagcatgaagggaagaggt |
488 |
Q |
| |
|
|| |||| ||||| |||||| ||||| ||||||| || || |||||||||| |||||| |||||||||||||||| |
|
|
| T |
5503215 |
taaacatgtagatgggatgctttacaggatcatccctcaacttgattttgtgtttgaacaacatgaagggaagaggt |
5503291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 12 - 233
Target Start/End: Original strand, 5393600 - 5393821
Alignment:
| Q |
12 |
catcatcagtggagaatttaaagcatcttgagtctatggacttgtcaaacaactccttgaatggagagattcctcaagggctttcaagtctatctttcct |
111 |
Q |
| |
|
|||||| ||||| |||||| ||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5393600 |
catcattagtggggaatttgaagaatcttgagtctatggacatttcaaacaactccttgaatggagagattcctcaagagctttcaagtctatctttcct |
5393699 |
T |
|
| Q |
112 |
agcatacatgaacctctcgttcaatcacctcgtgggtcgaattcctttgggtactcaaattcaatcatttgatgcagattccttcaaagggaatgaaggg |
211 |
Q |
| |
|
|||||| ||||| ||||||||||||||||| || || ||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||| |
|
|
| T |
5393700 |
agcatatatgaatctctcgttcaatcacctagttggacgaattcctttgggtactcaaattcaaacatttgatgtagattcctttgaagggaatgaagga |
5393799 |
T |
|
| Q |
212 |
ttatgtggacctccactgacca |
233 |
Q |
| |
|
|| || |||||||||||||||| |
|
|
| T |
5393800 |
ttgtgcggacctccactgacca |
5393821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 594 - 786
Target Start/End: Complemental strand, 5345598 - 5345407
Alignment:
| Q |
594 |
gtggatccattattcgtattcctcccttgttcactaggactctttttcttctcatgttagtattgttgaagcagatcgaatctgatagctatctgatagc |
693 |
Q |
| |
|
|||||||||| | | ||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||| ||| ||||| |||||||||| |||||| |
|
|
| T |
5345598 |
gtggatccatcacttgtattcctcccttgttcactaggcctctttctcttctcatgttagtatcgttgaagaagaacgaatatgatagctataagatagc |
5345499 |
T |
|
| Q |
694 |
ttaaaattgcagttagttttgttagctattttcagaaataatcactatgtattagagtgtatgcgagtttctctgctaccatttcagttctat |
786 |
Q |
| |
|
||| ||||||||||| || |||||| ||||||||||||||||| | |||||| |||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
5345498 |
ttactattgcagttag-ttcgttagcaattttcagaaataatcaatctgtattgtagtgcatgctagtttctctgctaccatttcagttctat |
5345407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 641 - 786
Target Start/End: Original strand, 5363960 - 5364104
Alignment:
| Q |
641 |
cttctcatgttagtattgttgaagcagatcgaatctgatagctatctgatagcttaaaattgcagttagttttgttagctattttcagaaataatcacta |
740 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||| |||||||||||| | ||||| ||||||||||||||||||| |
|
|
| T |
5363960 |
cttctcatgttagtattgttgaagaagaacgaatctgatagctatgtgatagcttaatgttgcagttagttct-ttagcaattttcagaaataatcactt |
5364058 |
T |
|
| Q |
741 |
tgtattagagtgtatgcgagtttctctgctaccatttcagttctat |
786 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
5364059 |
tgtattagaatgtatgaaagtttctctgctaccatttcagttctat |
5364104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 312 - 486
Target Start/End: Original strand, 5413331 - 5413505
Alignment:
| Q |
312 |
ttgattggaatttcttaagtgtggagttgggatttatttttggccttggaattttcatcctccccctggtttgcttgatgaaatggagtttgaggtaatc |
411 |
Q |
| |
|
|||| |||| |||| ||||| | |||||||||||| |||||||| ||||| |||||||||| || | |||| | || ||||| ||| ||| |||| || |
|
|
| T |
5413331 |
ttgaatggagtttcataagtattgagttgggatttttttttggctttggagttttcatccttcctgttttttgttggaagaaattgaggttgtggtattc |
5413430 |
T |
|
| Q |
412 |
caatcatgcagatgaaatgcttcacaggttcatcccccagctagattttgtgtatgaacagcatgaagggaagag |
486 |
Q |
| |
|
||| || | ||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5413431 |
caaacacgtagatgaaatgctttacaggttcatcccccggctagattttgtgtatgaacaacatgaagggaagag |
5413505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 312 - 486
Target Start/End: Original strand, 5393882 - 5394056
Alignment:
| Q |
312 |
ttgattggaatttcttaagtgtggagttgggatttatttttggccttggaattttcatcctccccctggtttgcttgatgaaatggagtttgaggtaatc |
411 |
Q |
| |
|
|||| |||| |||| ||||| | |||||||||||| |||||||| ||||| |||||||||| || | |||| | || ||||| | | ||| |||| || |
|
|
| T |
5393882 |
ttgaatggagtttcataagtattgagttgggatttctttttggctttggagttttcatccttcctgttttttgttggaagaaattgcggttgtggtattc |
5393981 |
T |
|
| Q |
412 |
caatcatgcagatgaaatgcttcacaggttcatcccccagctagattttgtgtatgaacagcatgaagggaagag |
486 |
Q |
| |
|
||| || | ||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5393982 |
caaacacgtagatgaaatgctttacaggttcatcccccggctagattttgtgtatgaacaacatgaagggaagag |
5394056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 701 - 823
Target Start/End: Original strand, 5356242 - 5356362
Alignment:
| Q |
701 |
tgcagttagttttgttagctattttcagaaataatcactatgtattagagtgtatgcgagtttctctgctaccatttcagttctatatataccagttata |
800 |
Q |
| |
|
|||||||||||| | |||||||||||| || |||| ||| ||||||||||| ||||| |||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
5356242 |
tgcagttagttt-gctagctattttcataa-taatgactctgtattagagtatatgctagtttctctgctgttatttcagttttatatataccagttata |
5356339 |
T |
|
| Q |
801 |
tatctacttcaaaatttagttta |
823 |
Q |
| |
|
||| |||||||||| |||||||| |
|
|
| T |
5356340 |
tatgtacttcaaaagttagttta |
5356362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 5363464 - 5363538
Alignment:
| Q |
12 |
catcatcagtggagaatttaaagcatcttgagtctatggacttgtcaaacaactccttgaatggagagattcctc |
86 |
Q |
| |
|
||||||| |||| || ||| ||| |||||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
5363464 |
catcatctgtggggactttgaagaatcttgagtctatggatttgtcaaataactccttgaatggagagattcctc |
5363538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 306 - 363
Target Start/End: Complemental strand, 5551484 - 5551427
Alignment:
| Q |
306 |
gttcaattgattggaatttcttaagtgtggagttgggatttatttttggccttggaat |
363 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
5551484 |
gttcaattgactggaattttttaagtgtggagttgggatttgtttttgggcttggaat |
5551427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 306 - 363
Target Start/End: Original strand, 5888149 - 5888206
Alignment:
| Q |
306 |
gttcaattgattggaatttcttaagtgtggagttgggatttatttttggccttggaat |
363 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
5888149 |
gttcaattgaatggaattttttaagtgtggaattgggatttatttttggacttggaat |
5888206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 306 - 354
Target Start/End: Original strand, 5891160 - 5891208
Alignment:
| Q |
306 |
gttcaattgattggaatttcttaagtgtggagttgggatttatttttgg |
354 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
5891160 |
gttcaattgattggaattttttaagtgtggagttgggatttgtttttgg |
5891208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 306 - 363
Target Start/End: Original strand, 5897012 - 5897069
Alignment:
| Q |
306 |
gttcaattgattggaatttcttaagtgtggagttgggatttatttttggccttggaat |
363 |
Q |
| |
|
|||||||||| ||||||| ||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
5897012 |
gttcaattgaacggaattttttaagtgtggaattgggatttatttttggacttggaat |
5897069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 307 - 363
Target Start/End: Complemental strand, 5611852 - 5611796
Alignment:
| Q |
307 |
ttcaattgattggaatttcttaagtgtggagttgggatttatttttggccttggaat |
363 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||| ||||||| || ||||| |
|
|
| T |
5611852 |
ttcaattgactggaattttttaagtgtggagttgggatttgtttttgggctcggaat |
5611796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 306 - 370
Target Start/End: Original strand, 5849938 - 5850002
Alignment:
| Q |
306 |
gttcaattgattggaatttcttaagtgtggagttgggatttatttttggccttggaattttcatc |
370 |
Q |
| |
|
|||| ||||| |||||||| ||||||||||||||||||||| ||||||| || |||||| ||||| |
|
|
| T |
5849938 |
gttcgattgactggaattttttaagtgtggagttgggatttgtttttgggctcggaattatcatc |
5850002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 306 - 369
Target Start/End: Original strand, 253683 - 253746
Alignment:
| Q |
306 |
gttcaattgattggaatttcttaagtgtggagttgggatttatttttggccttggaattttcat |
369 |
Q |
| |
|
||||||||||||||||||| |||||| |||| | |||||| ||||||| |||||||||||||| |
|
|
| T |
253683 |
gttcaattgattggaattttttaagtatggaacttggatttgtttttgggcttggaattttcat |
253746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 306 - 363
Target Start/End: Complemental strand, 5563037 - 5562980
Alignment:
| Q |
306 |
gttcaattgattggaatttcttaagtgtggagttgggatttatttttggccttggaat |
363 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| ||||||||| ||||||| || ||||| |
|
|
| T |
5563037 |
gttcaattgactggaattttttaagtgtggaattgggatttgtttttgggctcggaat |
5562980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 310 - 362
Target Start/End: Complemental strand, 5856378 - 5856326
Alignment:
| Q |
310 |
aattgattggaatttcttaagtgtggagttgggatttatttttggccttggaa |
362 |
Q |
| |
|
||||||||||||||| ||||||||||| | |||||||||||||| ||||||| |
|
|
| T |
5856378 |
aattgattggaattttttaagtgtggaactaggatttatttttgggcttggaa |
5856326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 820 - 877
Target Start/End: Original strand, 5356377 - 5356434
Alignment:
| Q |
820 |
tttagtttcatcattctctctgcattttgtccttatgaaggaactttggccacattat |
877 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||| | ||||||| ||||||||| |
|
|
| T |
5356377 |
tttagtttcatctttcactctgcattttgtccttatcattgaactttcaccacattat |
5356434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 306 - 363
Target Start/End: Original strand, 5854914 - 5854971
Alignment:
| Q |
306 |
gttcaattgattggaatttcttaagtgtggagttgggatttatttttggccttggaat |
363 |
Q |
| |
|
|||||||||| |||||||| || ||| |||||||||||||| ||||||| || ||||| |
|
|
| T |
5854914 |
gttcaattgactggaattttttgagtatggagttgggatttgtttttgggctcggaat |
5854971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 595; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 12 - 654
Target Start/End: Original strand, 20329470 - 20330112
Alignment:
| Q |
12 |
catcatcagtggagaatttaaagcatcttgagtctatggacttgtcaaacaactccttgaatggagagattcctcaagggctttcaagtctatctttcct |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20329470 |
catcatcagtggagaatttaaagcatcttgagtctatggacttgtcaaacaactccttgaatggagagattcctcaagggctttcaagtctatctttcct |
20329569 |
T |
|
| Q |
112 |
agcatacatgaacctctcgttcaatcacctcgtgggtcgaattcctttgggtactcaaattcaatcatttgatgcagattccttcaaagggaatgaaggg |
211 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
20329570 |
agcatatatgaacctctcgttcaatcacctcgtggggcgaattcctttgggtactcaaattcaatcatttgatgtagactccttcaaagggaatgaaggg |
20329669 |
T |
|
| Q |
212 |
ttatgtggacctccactgaccaccaattgcgacgatggtggagtgcaagggctgccaccaccagcatccgagttatctccttgtcataatgacagttcaa |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
20329670 |
ttatgtggacctccactgaccaccaattgcgatgatggtggagtgcaagggctgccaccaccagcatccgagttatctccttgtcataataacagttcaa |
20329769 |
T |
|
| Q |
312 |
ttgattggaatttcttaagtgtggagttgggatttatttttggccttggaattttcatcctccccctggtttgcttgatgaaatggagtttgaggtaatc |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||| || |
|
|
| T |
20329770 |
ttgattggaatttcttaagtgtggagttgggatttatttttggccttggaattttcatcctcccccttgtttgcttgatgaaatggaggttgtggtattc |
20329869 |
T |
|
| Q |
412 |
caatcatgcagatgaaatgcttcacaggttcatcccccagctagattttgtgtatgaacagcatgaagggaagaggtgtagatctctatggtggaggtac |
511 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
20329870 |
caatcgtgcagatgaaatgcttcacaggttcatcccccagctagattttgtgtatgaacagcatgaagggaagaggtgtagatctctaaggtggaggtac |
20329969 |
T |
|
| Q |
512 |
tagtcgcttaactcttggtttcgaagctatatgtccataaattggactcacatcaatggtgcaagcaaaacatgactcaggtgtggatccattattcgta |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20329970 |
tagtcgcttaactcttggtttcgaagctatatgtccataaattggactcacatcaatggtgcaagcaaaacatgactcaggtgtggatccattattcgta |
20330069 |
T |
|
| Q |
612 |
ttcctcccttgttcactaggactctttttcttctcatgttagt |
654 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20330070 |
ttcctcccttgttcactaggactctttttcttctcatgttagt |
20330112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 522 - 939
Target Start/End: Original strand, 20334590 - 20335015
Alignment:
| Q |
522 |
actcttggtttcgaagctatatgtccataaattggactcacatcaatggtgcaagcaaaacatgactcaggtgtggatccattattcgtattcctccctt |
621 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20334590 |
actcttggtttcgaagctatatgtccataaattggactcacatcaatggtgcaagcaaaacatgactcaggtgtggatccattattcgtattcctccctt |
20334689 |
T |
|
| Q |
622 |
gttcactaggactctttttcttctcatgttagtattgttgaagcagatcgaatctgatagctatctgatagct-----------taaaattgcagttagt |
710 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
20334690 |
gttcactaggactctttttcttctcatgttagtattgttgaagcagaacgaatctgatagctatctgatagctatctgatagcttaaaattgcagttagt |
20334789 |
T |
|
| Q |
711 |
tttgttagctattttcagaaataatcactatgtattagagtgtatgcgagtttctctgctaccatttcagttctatatataccagttatatatctacttc |
810 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20334790 |
tt-gttagctattttcagaaataatcactatgtattagagtgtatgtgagtttctctgctaccatttcagttctatatataccagttatatatctacttc |
20334888 |
T |
|
| Q |
811 |
aaaatttagtttagtttcatcattctctctgcattttgtccttatgaaggaactttggccacattatgtcattgcaaattatttctcattaattgtgaaa |
910 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
20334889 |
aaaagttagtttagtttcatcattctctctgcattttgtccttatgaatgaactttggccacatta--tcattgcatattatttctcattaattgtgaaa |
20334986 |
T |
|
| Q |
911 |
caatgtcaacacaaaattagaaaatgaaa |
939 |
Q |
| |
|
||||||||||||||| ||||||||||||| |
|
|
| T |
20334987 |
caatgtcaacacaaagttagaaaatgaaa |
20335015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 637 - 712
Target Start/End: Complemental strand, 170362 - 170287
Alignment:
| Q |
637 |
ttttcttctcatgttagtattgttgaagcagatcgaatctgatagctatctgatagcttaaaattgcagttagttt |
712 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||| ||||||||| ||||| ||| |||||||||||||| |
|
|
| T |
170362 |
ttttcttctcatgttagtatcgttgaagcagaatgaatcggatagctatgtgataacttgcgattgcagttagttt |
170287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 744 - 786
Target Start/End: Complemental strand, 170279 - 170237
Alignment:
| Q |
744 |
attagagtgtatgcgagtttctctgctaccatttcagttctat |
786 |
Q |
| |
|
|||||||||||||| ||||||||||| ||| |||||||||||| |
|
|
| T |
170279 |
attagagtgtatgctagtttctctgcaaccctttcagttctat |
170237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 658 - 712
Target Start/End: Original strand, 31052908 - 31052962
Alignment:
| Q |
658 |
gttgaagcagatcgaatctgatagctatctgatagcttaaaattgcagttagttt |
712 |
Q |
| |
|
||||||||||| |||||| ||||||||| |||||||||| |||||||||||||| |
|
|
| T |
31052908 |
gttgaagcagaacgaatcggatagctatgtgatagcttacgattgcagttagttt |
31052962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 744 - 786
Target Start/End: Original strand, 31052970 - 31053012
Alignment:
| Q |
744 |
attagagtgtatgcgagtttctctgctaccatttcagttctat |
786 |
Q |
| |
|
|||||||||||||| ||||||||||| ||| |||||||||||| |
|
|
| T |
31052970 |
attagagtgtatgctagtttctctgcaaccctttcagttctat |
31053012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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