View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14799_low_2 (Length: 380)
Name: NF14799_low_2
Description: NF14799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14799_low_2 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 203 - 380
Target Start/End: Complemental strand, 25730721 - 25730538
Alignment:
| Q |
203 |
cactcgatcaaacgtttcttgcgtcacaaactaagattggtggatacataactatcatctcaaaactctttaaggattcaacttgaatcctagattgatc |
302 |
Q |
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| T |
25730721 |
cactcgatcaaacgtttcttgcgtcacaaactaagatttgtggatacataactatcatctcaaaactttttaaggatttaacttgaatcctagattgatc |
25730622 |
T |
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| Q |
303 |
atacaagttcatttatttgaaggaaaaatttt------cagagagagagtattctttgtttaaaactcaaactcaaaaaatcca |
380 |
Q |
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| T |
25730621 |
atacaagttcatttatttgaaggaaaatttttgagagagagagagagagcattctttgtttaaaactcaaactcaaaaaatcca |
25730538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 25730842 - 25730794
Alignment:
| Q |
82 |
ctattctcacaagataaaattgttgaacgaatggtgtaggtaagtcacc |
130 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25730842 |
ctatactcacaagataaaattgttgaacgaatggtgtaggtaagtcacc |
25730794 |
T |
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