View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1479_high_1 (Length: 435)
Name: NF1479_high_1
Description: NF1479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1479_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 431
Target Start/End: Original strand, 998440 - 998854
Alignment:
| Q |
18 |
ggaattggaaacttatgcgaatgagataaataaaatcacatattgttctcaatataacagtaaacttcgctagatcgttatctatggctaaacaatatga |
117 |
Q |
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| T |
998440 |
ggaattggaaacttatgcgaatgagataaataaaatcacatattgttctcaatataacagtaaacttcgctagattgttatctatggctaaacaatatga |
998539 |
T |
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| Q |
118 |
tttgtggttgaaataaggaagatnnnnnnngaaaggatcacaagctacagaaaggatgcatagaatctcgaaaaacttgttccaataaagaagattctta |
217 |
Q |
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| T |
998540 |
tttgtggttgaaataaggaagataaaaaaagaaaggatcacaagctacagaaaggatgcatagaatctcgaaaaacttgttccaataaagaagattctta |
998639 |
T |
|
| Q |
218 |
tcttgaggatcaaatacttttttctgtgacactttaagatcttctggaaaaactccccaagtgactccacttttgagtgatcttccaatattcattagtc |
317 |
Q |
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| T |
998640 |
tcttgaggatcaaatacttttttctgtgacactttaagatcttctggaaaaactccccaagtgactccacttttgagtgatcttccaatattcattagtc |
998739 |
T |
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| Q |
318 |
catctgatccctttttcactccgactcgaaacgatttcgacgaa-nnnnnnncccgcgaccgggaataagaaaaggcaaacaatctaaattaaatcttaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
998740 |
catctgatccctttttcactccgactcgaaacgatttcgacgaattttttttcccgcgaccgggaataagaaaaggcaaacaatctaaattaaatcttaa |
998839 |
T |
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| Q |
417 |
cttcttcatctcact |
431 |
Q |
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| T |
998840 |
cttcttcatcccact |
998854 |
T |
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