View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1479_high_11 (Length: 294)
Name: NF1479_high_11
Description: NF1479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1479_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 14 - 278
Target Start/End: Original strand, 41653953 - 41654217
Alignment:
| Q |
14 |
gaaaggaacaagtcttgaaatataaggtaatttatttaccactctccaatatttaaccagccaatttctctgcaattgtcttatggggtcatcctttaac |
113 |
Q |
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| T |
41653953 |
gaaaggaacaagtcttgaaatataaggtaatttatttaccactctccaatatttaaccagccaatttctctgcaattgtcttatggggtcatcctttaac |
41654052 |
T |
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| Q |
114 |
ttccaggggtcaaacatttatgtgaagaatattgatgacaatgttagtgatgaaggactgagagatcactttagtgtatgcggcactataacttctgcaa |
213 |
Q |
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| T |
41654053 |
ttccaggggtcaaacatttatgtgaagaatattgatgacaatgttagtgatgaaggactgagagatcactttagtgtatgtggcactataacttctgcaa |
41654152 |
T |
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| Q |
214 |
agattatgcgagatgacaaagggataagcaaaggatttggttttgtgtgcttctccactcctgag |
278 |
Q |
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| T |
41654153 |
agattatgcgagatgacaaagggataagcaaaggatttggttttgtgtgcttctccactcctgag |
41654217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 259
Target Start/End: Complemental strand, 27026957 - 27026806
Alignment:
| Q |
108 |
tttaacttccaggggtcaaacatttatgtgaagaatattgatgacaatgttagtgatgaaggactgagagatcactttagtgtatgcggcactataactt |
207 |
Q |
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|||||||| ||||| |||||||||||||||||||| |||||| || |||| | ||||||| ||| | || || ||||||| ||| ||| | | |
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| T |
27026957 |
tttaactttcagggatcaaacatttatgtgaagaacattgataccagtgttggcgatgaagaactacgggaccattttagtgcatgtggcgaagtcttgt |
27026858 |
T |
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| Q |
208 |
ctgcaaagattatgcgagatgacaaagggataagcaaaggatttggttttgt |
259 |
Q |
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| T |
27026857 |
ctgcaaaagttatgcgagatgacaaagggacaagcaaggggtttggttttgt |
27026806 |
T |
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