View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1479_high_20 (Length: 249)
Name: NF1479_high_20
Description: NF1479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1479_high_20 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 9 - 249
Target Start/End: Complemental strand, 4179202 - 4178962
Alignment:
| Q |
9 |
agcagagaggagcctgatacagaaagctataagttcgacatttcaaagcacggcgcatttggcaaaccttctacctacaggcactgttctggctttccaa |
108 |
Q |
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| T |
4179202 |
agcagagaggagcctggtacagaaagctataagttcgacatttcaaagcacggcgcatttggcaaaccttctacctacaggcactgttctggctttccaa |
4179103 |
T |
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| Q |
109 |
cttttgtcaccaatttttacaaatgttggcaactgtgactctgtcagcaagtccatgacttctgtacttgtgactctatgtggtgcatcatgcttcctgc |
208 |
Q |
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| T |
4179102 |
cttttgtcaccaatttttacaaatgttggcaactgtgactctgtctgcaagtccatgacttctgtacttgtgactctatgtggtgcatcatgcttcctgc |
4179003 |
T |
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| Q |
209 |
taaactttacagatagcataagagacagcaaggggaatatt |
249 |
Q |
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| T |
4179002 |
taaactttacagatagcataagagacagcaaggggaatatt |
4178962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 23 - 249
Target Start/End: Complemental strand, 4168261 - 4168035
Alignment:
| Q |
23 |
tgatacagaaagctataagttcgacatttcaaagcacggcgcatttggcaaaccttctacctacaggcactgttctggctttccaacttttgtcaccaat |
122 |
Q |
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||||||| | ||||||||||| ||||||||| |||||||| ||||| |||||||||||||||||||||||||| || || || |||||||| |||||||| |
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| T |
4168261 |
tgatacaaacagctataagtttgacatttcagagcacggcacatttagcaaaccttctacctacaggcactgtccttgcattacaacttttatcaccaat |
4168162 |
T |
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| Q |
123 |
ttttacaaatgttggcaactgtgactctgtcagcaagtccatgacttctgtacttgtgactctatgtggtgcatcatgcttcctgctaaactttacagat |
222 |
Q |
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| T |
4168161 |
ctttacaaatattggcagctgtgactctgtcagcaagtggatgactgctgcacttgtgactctctgtggtgcatcatgctttctgctaagctttactgat |
4168062 |
T |
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| Q |
223 |
agcataagagacagcaaggggaatatt |
249 |
Q |
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| T |
4168061 |
agctttagagacagcaagggtaatatt |
4168035 |
T |
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