View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1479_high_4 (Length: 362)
Name: NF1479_high_4
Description: NF1479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1479_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 20 - 351
Target Start/End: Original strand, 1559637 - 1559968
Alignment:
| Q |
20 |
gtgtggtatatgtagctctttctctgaatgcgttaaaaatcgtctgattttgattttgattttgattatgctagtgcatgatacgattgttctactaatc |
119 |
Q |
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| T |
1559637 |
gtgtggtatatgtagctctttctctgaatgcgttaaaaatcgtctgattttgattttgattttgattatgttagtacatgatacgattgttctactaatc |
1559736 |
T |
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| Q |
120 |
attggtcttgttgataatgttaatattaattgtaactaggattagtttgtcacaatagcttggaattaattacaatttagttgcaggtagtttctcgttg |
219 |
Q |
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| T |
1559737 |
attggtcttgttgataatgttaatattaattgtaactaggattagtttgtcacaatagcttggaattaattacaatttagttacaggtagtttctcgttg |
1559836 |
T |
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| Q |
220 |
ataatgtgtataaccgttgtaatttaggcaaactattacaagtttaggagtcgagtctacggaggctccacgagtttagctagattctcgagtttgacaa |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
1559837 |
ataatgtgtataaccgttgtaatttaggcaaactattacaagtttaggattcgagtctacggaggctccacgagtttagctagactctcgaatttgacaa |
1559936 |
T |
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| Q |
320 |
ggttgatcactcaattttctgtattttcttgg |
351 |
Q |
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||||||||||||||||||||||||||| |||| |
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| T |
1559937 |
ggttgatcactcaattttctgtattttgttgg |
1559968 |
T |
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