View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1479_high_6 (Length: 332)
Name: NF1479_high_6
Description: NF1479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1479_high_6 |
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| [»] scaffold0041 (1 HSPs) |
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| [»] scaffold0472 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 14 - 322
Target Start/End: Original strand, 10977838 - 10978141
Alignment:
| Q |
14 |
aatgcttgatattgcgataacttttatcacgaattcttcacaaccgtacaatacaagctaccnnnnnnnnncttccaccaaatcccgaatttcattcatt |
113 |
Q |
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| T |
10977838 |
aatgcttgatatcgcgataacttttatcaggaattcttcatgactgtacaatacaagcaaccttttt-----ttccaccaaatccggaatttcattcatt |
10977932 |
T |
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| Q |
114 |
gagcggtttaagcacgttttattaaagcaatattgtacttcgtggaattttcttgaaaagaattgtcgctggatttagcagcgctcaattttaaattgtt |
213 |
Q |
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| T |
10977933 |
gagcggtttaagcacgttttattaaagcaatattgtacttcgtggaattttcttgaaaagaattgtcgctggatttagcagcgctcaattttaaattgtt |
10978032 |
T |
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| Q |
214 |
taggttggtgtcgattccaaattggttacttgactcgattgactctaatgacctaaatactattatgcaatgaaaatttgatctaaattaaatgctatta |
313 |
Q |
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| T |
10978033 |
taggttggtgttgattccaaattggttacttgactcgattgactctaatgacctaaatactattatgcaatgcaaatttgatctaaattaaatgctatta |
10978132 |
T |
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| Q |
314 |
ttacctatg |
322 |
Q |
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| T |
10978133 |
ttacctatg |
10978141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 88 - 199
Target Start/End: Original strand, 38937462 - 38937573
Alignment:
| Q |
88 |
ccaccaaatcccgaatttcattcattgagcggtttaagcacgttttattaaagcaatattgtacttcgtggaattttcttgaaaagaattgtcgctggat |
187 |
Q |
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| T |
38937462 |
ccaccaaatccggaatttaggtgattgagcggtttagccacgttttattaaagcaatattgcacttcgtggaatttttgggaaaagaattgtggctggat |
38937561 |
T |
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| Q |
188 |
ttagcagcgctc |
199 |
Q |
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||||| |||||| |
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| T |
38937562 |
ttagcggcgctc |
38937573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 193
Target Start/End: Complemental strand, 46551254 - 46551147
Alignment:
| Q |
86 |
ttccaccaaatcccgaatttcattcattgagcggtttaagcacgttttattaaagcaatattgtacttcgtggaattttcttgaaaagaattgtcgctgg |
185 |
Q |
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| T |
46551254 |
ttccaccaaatctggaatttaggtgattgagcagtttaggcacgttttcttaaagcaaaaatgcggttcgtggaatttttgggaaaatgattgtcgctgg |
46551155 |
T |
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| Q |
186 |
atttagca |
193 |
Q |
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| T |
46551154 |
atttagca |
46551147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 199
Target Start/End: Complemental strand, 93692 - 93605
Alignment:
| Q |
111 |
attgagcggtttaagcacgttttattaaagcaatattgtacttcgtggaattttcttgaaaagaattgtcgctggatttagcagcgctc |
199 |
Q |
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| T |
93692 |
attgagcggtttagccacgttttattaaggcaaaat-gcacttcgtggaattttcgggaaaagaattgtcgctggatttagcagcgctc |
93605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 199
Target Start/End: Original strand, 40872590 - 40872677
Alignment:
| Q |
111 |
attgagcggtttaagcacgttttattaaagcaatattgtacttcgtggaattttcttgaaaagaattgtcgctggatttagcagcgctc |
199 |
Q |
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| T |
40872590 |
attgagcggtttagccacgttttattaaggcaaaat-gcacttcgtggaattttcgggaaaagaattgtcgctggatttagcagcgctc |
40872677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 29007563 - 29007502
Alignment:
| Q |
14 |
aatgcttgatattgcgataacttttatcacgaattcttcacaaccgtacaatacaagctacc |
75 |
Q |
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| T |
29007563 |
aatgcttaatatcgcgacaacttttatcacgaatgcttcacaactgcacagtacaagctacc |
29007502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0472 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0472
Description:
Target: scaffold0472; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 199
Target Start/End: Original strand, 8705 - 8792
Alignment:
| Q |
111 |
attgagcggtttaagcacgttttattaaagcaatattgtacttcgtggaattttcttgaaaagaattgtcgctggatttagcagcgctc |
199 |
Q |
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| T |
8705 |
attgagcggtttagccacgttttattatagtaaaaatgcacttcatggaatttttgagaaaag-attgtcgctggatctagcagtgctc |
8792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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