View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1479_low_11 (Length: 313)
Name: NF1479_low_11
Description: NF1479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1479_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 6060465 - 6060774
Alignment:
| Q |
1 |
atacacacgagatccgtcttggagagatgttgatggagttttatatgacaaattctccactacaatctctttgagttcaagactgtctttgagtttcaag |
100 |
Q |
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| T |
6060465 |
atacacacgagattcgtcttggagagatgttgatggagttttatatgacaaattctccactacaatctctttgagttcaagactgtctttgagtttcaaa |
6060564 |
T |
|
| Q |
101 |
atatattctagtctctcaactatatcttcaaacatactaaccataaccctatcttgcacattgaaaaagcgcgaaaagagattagttacctctttttgaa |
200 |
Q |
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| T |
6060565 |
atatattctagtctctcaactatatcttcaaacttactaaccatacccctatcttgcacattgaaaaagcgcgaaaagagattagttacctctttttgaa |
6060664 |
T |
|
| Q |
201 |
tcacagtttttgtcgaaacttcatccaataagtcaacagctacatatacagcatctttgagatcattgagccaattgttgacatcagaatccctggtttg |
300 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6060665 |
tcacagtttttgtcgaaacttcatccaataagtcatcagctacatagacagcatctttgagatcattgagccagttgttgacatcagaatccctggtttg |
6060764 |
T |
|
| Q |
301 |
tttcatctca |
310 |
Q |
| |
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|||| ||||| |
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| T |
6060765 |
tttcttctca |
6060774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 41932641 - 41932576
Alignment:
| Q |
223 |
atccaataagtcaacagctacatatacagcatctttgagatcattgagccaattgttgacatcaga |
288 |
Q |
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|||||| | |||| |||| ||||| ||||||||||||||||||| |||||| ||||| ||| |||| |
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| T |
41932641 |
atccaaaatgtcatcagcaacatagacagcatctttgagatcatcgagccatttgttaacagcaga |
41932576 |
T |
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