View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1479_low_12 (Length: 302)
Name: NF1479_low_12
Description: NF1479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1479_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 48 - 244
Target Start/End: Original strand, 23847213 - 23847408
Alignment:
| Q |
48 |
gttactaaaaggtaataaaatattgtatataagatagacttggaatttataaatggttaataacaagatacttaccgaaaaaggttgcaagaagaaatag |
147 |
Q |
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| T |
23847213 |
gttactaaaaggtgataaaatattgtatataagatagacttggaatttataaatggttaataacaagatacttaccgaaaaaggctgcaagaagaaatag |
23847312 |
T |
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| Q |
148 |
ggaaagaaaaatgatcgaagcataaaaataatgtgggattccagccatattagtcctccttttcacgtaatgaataaaaaagtttatcaatttataa |
244 |
Q |
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| T |
23847313 |
ggaaagaaaaatgatcgaaccataaaaataacatgggattccagccatattagtcctccttttcacgtaatgaat-aaaaagtttatcaatttataa |
23847408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 23843552 - 23843511
Alignment:
| Q |
239 |
ttataattatttttcaataactgtaaggtacatcaatgagtc |
280 |
Q |
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| T |
23843552 |
ttataattatttttcaataactctaaggtacatcaattagtc |
23843511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 23847513 - 23847558
Alignment:
| Q |
239 |
ttataattatttttcaataactgtaaggtacatcaatgagtcgttc |
284 |
Q |
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| T |
23847513 |
ttataattatttttcaataactctaaggtagatcaattagtcgttc |
23847558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 130 - 244
Target Start/End: Complemental strand, 26693721 - 26693606
Alignment:
| Q |
130 |
ggttgcaagaagaaatagggaaagaaaaatgatcgaagcataaaaataatgtgggattccagccatattagtcctccttttcacgtaatgaataa-aaaa |
228 |
Q |
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| T |
26693721 |
ggttgcaacatgaaatagataaagaaagatgatgaaagcataaaaataacgtgggatttgagccatattattccttcttttcacgtaacaaataagaaaa |
26693622 |
T |
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| Q |
229 |
gtttatcaatttataa |
244 |
Q |
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| T |
26693621 |
atttatcaatttataa |
26693606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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