View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1479_low_15 (Length: 278)
Name: NF1479_low_15
Description: NF1479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1479_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 262
Target Start/End: Complemental strand, 36935772 - 36935518
Alignment:
| Q |
11 |
aatttaggggggttaacttattcaatgacctaatgaatccccacttagccataatacatcacttacactaagaccaaggattaacac---cttgatcagg |
107 |
Q |
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| T |
36935772 |
aatttaggggggttaacttattcaatgacctaatgaatccccacttagccataatacatcacttacactaagaccaaggattaacacgaccttgatcagg |
36935673 |
T |
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| Q |
108 |
tttactttcagttcgtgatgccnnnnnnngatatggataatgagaaatgtaccacaaggggttgctagttgatggtgatagaaggaaaagaagcacatat |
207 |
Q |
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| T |
36935672 |
tttactttcagttcgtgatgccaaaaaaagatatggataatgagaaatgtaccgcaaggggttgctagttgatggtgatggaaggaaaagaagcacatat |
36935573 |
T |
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| Q |
208 |
aacaaaatcacaaccgcgacaaaaatcagtgccataaccagaaacacattggaca |
262 |
Q |
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| T |
36935572 |
aacaaaatcacaacggcgacaaaaatcagtgccataaccagaaacacattggaca |
36935518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 92 - 257
Target Start/End: Complemental strand, 36956542 - 36956377
Alignment:
| Q |
92 |
taacaccttgatcaggtttactttcagttcgtgatgccnnnnnnngatatggataatgagaaatgtaccacaaggggttgctagttgatggtgatagaag |
191 |
Q |
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| T |
36956542 |
taacatcttgatcaggtttactttcagtttgtgatgccaagaaaagaaaagggtagtgagaaatgtaccgcaatggcttgctagttgatgatgatggaag |
36956443 |
T |
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| Q |
192 |
gaaaagaagcacatataacaaaatcacaaccgcgacaaaaatcagtgccataaccagaaacacatt |
257 |
Q |
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| T |
36956442 |
gaaaagaagcatatataaaaaaatcacaaccgcaacaaaaatcagagccataaccagaaacacatt |
36956377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 151 - 257
Target Start/End: Complemental strand, 36948407 - 36948301
Alignment:
| Q |
151 |
gaaatgtaccacaaggggttgctagttgatggtgatagaaggaaaagaagcacatataacaaaatcacaaccgcgacaaaaatcagtgccataaccagaa |
250 |
Q |
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|||||||||| ||| || |||||||||||| |||| |||||||||| |||| |||||| | |||| ||||| | |||||||||| || ||||||||||| |
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| T |
36948407 |
gaaatgtaccgcaatggtatgctagttgatgatgatggaaggaaaaggagcatatataaaagaatctcaaccacaacaaaaatcaatgtcataaccagaa |
36948308 |
T |
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| Q |
251 |
acacatt |
257 |
Q |
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| T |
36948307 |
acacatt |
36948301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 100 - 262
Target Start/End: Original strand, 12493290 - 12493452
Alignment:
| Q |
100 |
tgatcaggtttactttcagttcgtgatgccnnnnnnngatatggataatgagaaatgtaccacaaggggttgctagttgatggtgatagaaggaaaagaa |
199 |
Q |
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| T |
12493290 |
tgatcatgtttactttcagttcgtgatgccaaaaaaagataaaggtagtgagaaatgtaccgcaatggcttgctagttgatgatgatggaaggaaactga |
12493389 |
T |
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| Q |
200 |
gcacatataacaaaatcacaaccgcgacaaaaatcagtgccataaccagaaacacattggaca |
262 |
Q |
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| T |
12493390 |
gcatatataacgcaatcacaaccgcaataaaaatcaatgccataaccagagacacatttgaca |
12493452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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