View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1479_low_17 (Length: 267)
Name: NF1479_low_17
Description: NF1479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1479_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 2099711 - 2099473
Alignment:
| Q |
13 |
tgaaatgggcacataagatccacacaacatgacagaaattttaagtccctaaactgctaatggtgggcatctacacattgggcatgttcaaatttacaat |
112 |
Q |
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| T |
2099711 |
tgaaatgggcacataagatccaaacaacatgacagaaattttaagtccctaaactgctaatggtgggcatctacacattgggcatgttcaaatttacaat |
2099612 |
T |
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| Q |
113 |
attacaaacaacatttgacctttgacatgccagttcacatgtgaaaccaccaatttgctaaactgtagtgcttactagttgctagacagaaatgtaacat |
212 |
Q |
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| T |
2099611 |
attacaaacaacatttgacctttgacatgccagttcacatgtgaaaccaccaatttgctaaactgtagtacttactagttgctagacagaaatgtaacat |
2099512 |
T |
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| Q |
213 |
agttgccaatagtttttgacagtggcatgctgtcagatg |
251 |
Q |
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| T |
2099511 |
agttgccaatagtttttgacagtggcatgctgtcagatg |
2099473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 51 - 251
Target Start/End: Complemental strand, 2107833 - 2107640
Alignment:
| Q |
51 |
ttttaagtccctaaactgctaatggtgggcatctacacattgggcatgttcaaatttacaatattacaaacaacatttgacctttgacatgccagttcac |
150 |
Q |
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| T |
2107833 |
ttttaagtccctaaactgctaatagtgggcatctacacattaggcatgttcaaatttacaatattacaaacaatatttgacctttgacatgccagttcac |
2107734 |
T |
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| Q |
151 |
atgtgaaaccaccaatttgctaaactgtagtgcttactagttgctagacagaaatgtaacatagttgccaatagtttttgacagtggcatgctgtcagat |
250 |
Q |
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| T |
2107733 |
atgtgaaaccaccaatttgctaaactgaag-------tacttgctagacataaatgtaacatagttgccaatagtttttgacagtggcatgccgtcggat |
2107641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 93 - 247
Target Start/End: Complemental strand, 2089337 - 2089192
Alignment:
| Q |
93 |
ggcatgttcaaatttacaatattacaaacaacatttgacctttgacatgccagttcacatgtgaaaccaccaatttgctaaactgtagtgcttactagtt |
192 |
Q |
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| T |
2089337 |
ggcatgttcaaatttacaatattacaaacaatatttgacctttgacatgcatggtcacatataaaaccactaatgtgctaaattgt---------tactt |
2089247 |
T |
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| Q |
193 |
gctagacagaaatgtaacatagttgccaatagtttttgacagtggcatgctgtca |
247 |
Q |
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| T |
2089246 |
gttagacagaaagataacatagttgccaatagtttttgacagtggcatgctgtca |
2089192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 247
Target Start/End: Complemental strand, 2103426 - 2103380
Alignment:
| Q |
200 |
agaaatgtaacatagttgccaatagtttttgacagtggcatgctgtca |
247 |
Q |
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| T |
2103426 |
agaaaagtaacatagttgccaataatttt-gacagtggcatgctgtca |
2103380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 233
Target Start/End: Complemental strand, 2063423 - 2063389
Alignment:
| Q |
199 |
cagaaatgtaacatagttgccaatagtttttgaca |
233 |
Q |
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| T |
2063423 |
cagaaatgtaacatagttgccattagtttttgaca |
2063389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 2059688 - 2059640
Alignment:
| Q |
93 |
ggcatgttcaaatttacaatattacaaacaacatttgacctttgacatg |
141 |
Q |
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| T |
2059688 |
ggcatattcaaattaacaatattgtaaacaacatttaacctttgacatg |
2059640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 2103529 - 2103481
Alignment:
| Q |
93 |
ggcatgttcaaatttacaatattacaaacaacatttgacctttgacatg |
141 |
Q |
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| T |
2103529 |
ggcatgttcaaattgacaaaattgtaaacaacattcgacctttgacatg |
2103481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 39182168 - 39182217
Alignment:
| Q |
93 |
ggcatgttcaaatttacaatattacaaacaacatttgacctttgacatgc |
142 |
Q |
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| T |
39182168 |
ggcatgttcaaattgacaaaattgtaaacaacatttgacttttgacatgc |
39182217 |
T |
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