View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1479_low_24 (Length: 245)
Name: NF1479_low_24
Description: NF1479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1479_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 32528136 - 32528349
Alignment:
| Q |
18 |
catcaaatattaacagacacaaaaccaccattgtggttggcaataaaccaaacgccttgaaagttgtagatttggaaagaaccagaaatcagaggcaaga |
117 |
Q |
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| T |
32528136 |
catcaaatattaacagacacaaaaccaccattgtggttggcaataaaccaaacgccttgaaagttgtagatctggaaagaaccagaaatcagaggcaaga |
32528235 |
T |
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| Q |
118 |
aatacaaccacaaactaaagatttcaaactgaacctacctagatggggnnnnnnnnnccaaaaccactgacgtaaccgccagagttctgaaataacaatg |
217 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32528236 |
aatacagccacaaactaaagatttcaaactgaacctacctagatgggg-tttttcttccaaaaccactgacgtaaccgccagagttctgaaataacaatg |
32528334 |
T |
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| Q |
218 |
gacaaacattcatct |
232 |
Q |
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||||||||||||||| |
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| T |
32528335 |
gacaaacattcatct |
32528349 |
T |
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