View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1479_low_26 (Length: 242)
Name: NF1479_low_26
Description: NF1479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1479_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 4178894 - 4178671
Alignment:
| Q |
1 |
ttgctgcaaaatatcgcataaagtttatagatttcatgcatgcaatgatgtcaattctggtgtttgcagcaattgcattgtttgatcagaatgtggtgaa |
100 |
Q |
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| T |
4178894 |
ttgctgcaaaatatcgcataaagtttatagatttcatgcatgcgatgatgtcaattctggtgtttgcagcaattgcattgtttgatcagaatgtggtgaa |
4178795 |
T |
|
| Q |
101 |
ttgcttttttccagaaccatcaaaagagatacaagaaatcctcacggcgttgcctgtggcaattggcgttttttgcagcatgcttttcgttgcatttcct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4178794 |
ttgcttttttccagaaccatcaaaagagatacaagaaatcctcacggcgttgcctgtggcaattggcgttttttgcagcatgcttttcgttgcatttcct |
4178695 |
T |
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| Q |
201 |
actgagagacatggaattgggttc |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
4178694 |
actgagagacatggaattgggttc |
4178671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 4167967 - 4167748
Alignment:
| Q |
1 |
ttgctgcaaaatatcgcataaagtttatagatttcatgcatgcaatgatgtcaattctggtgtttgcagcaattgcattgtttgatcagaatgtggtgaa |
100 |
Q |
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||||||| ||||| |||||| |||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4167967 |
ttgctgctaaataccgcatacggtttatagattttatgcatgcagtaatgtcaattctggtgtttgcagcaattgcattgtttgatcggaatgtggtgaa |
4167868 |
T |
|
| Q |
101 |
ttgcttttttccagaaccatcaaaagagatacaagaaatcctcacggcgttgcctgtggcaattggcgttttttgcagcatgcttttcgttgcatttcct |
200 |
Q |
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| T |
4167867 |
ttgcttttttccagaaccatcaaaagagatacaagaaatcctcacggcgttgcctgtggcaattggcgatttttgcagcatgcttttcgttacatttcct |
4167768 |
T |
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| Q |
201 |
actgagagacatggaattgg |
220 |
Q |
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| T |
4167767 |
acagagagacatggaattgg |
4167748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 220
Target Start/End: Original strand, 34944507 - 34944722
Alignment:
| Q |
5 |
tgcaaaatatcgcataaagtttatagatttcatgcatgcaatgatgtcaattctggtgtttgcagcaattgcattgtttgatcagaatgtggtgaattgc |
104 |
Q |
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||||||||||| ||| ||| || ||||||||||||||||| ||||||||| |||| ||| |||| |||||| |||||||||| |||||||| || || |
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| T |
34944507 |
tgcaaaatatcaactaaggttcattgatttcatgcatgcaattatgtcaattttggttttttcagctattgcaatgtttgatcataatgtggttaactgt |
34944606 |
T |
|
| Q |
105 |
ttttttccagaaccatcaaaagagatacaagaaatcctcacggcgttgcctgtggcaattggcgttttttgcagcatgcttttcgttgcatttcctactg |
204 |
Q |
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|| |||||| ||| ||| | ||||| | ||||||| || || |||||||| | |||||| ||||| || |||||||| || ||||||||||||||| |
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| T |
34944607 |
ttctttccatcaccttcatatgagatgcgtcaaatccttactgcattgcctgttggaattggtgttttctgtagcatgctgtttgttgcatttcctactc |
34944706 |
T |
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| Q |
205 |
agagacatggaattgg |
220 |
Q |
| |
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| |||||||||||||| |
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| T |
34944707 |
atagacatggaattgg |
34944722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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