View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1479_low_27 (Length: 240)
Name: NF1479_low_27
Description: NF1479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1479_low_27 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 3e-84; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 70 - 240
Target Start/End: Original strand, 38389467 - 38389639
Alignment:
| Q |
70 |
gggttttgtatgcctcgagagaaaagttgtggcagattttctacaacaagtaagtatataacattatgatcttatttcta--catggttagaatataatg |
167 |
Q |
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| T |
38389467 |
gggttttgtatgccttgagagaaaagttgtggcagattttctacaacaagtaagtatataacattatgatcttatttctatacatggttagaatataatg |
38389566 |
T |
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| Q |
168 |
agttttaatagtttaatttttggttattaattattatgtggtattgtttgttggtcacatcaatgaaagatca |
240 |
Q |
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| T |
38389567 |
agttttaatagtttaatttttggttattaattattatgtggtattgtttgttggtcacatcaatgaaagatca |
38389639 |
T |
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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 126 - 198
Target Start/End: Complemental strand, 38390226 - 38390154
Alignment:
| Q |
126 |
tataacattatgatcttatttctacatggttagaatataatgagttttaatagtttaatttttggttattaat |
198 |
Q |
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| T |
38390226 |
tataacgttatgatcttctttttacatgattagaagataatgagttttaatagtttcatttttggttattaat |
38390154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 38389388 - 38389440
Alignment:
| Q |
1 |
ttatactctcttgagggacatattgtgtacacagtctgtgtgagcatgtgcttg |
54 |
Q |
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| T |
38389388 |
ttatactctct-gagggacatattgtgtacacagtctgtgtgagcatgtgcttg |
38389440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 240
Target Start/End: Original strand, 38390913 - 38390995
Alignment:
| Q |
150 |
catggttagaatataatgagttttaatagtttaatttttggttattaattattatgtggtattgtttgttggtcacatcaatgaaagatca |
240 |
Q |
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| T |
38390913 |
catggttagaacataatgagttttaatagtttaattttttgttatta----ttatgtggtattgta----ggtcaaatcaatgaaagatca |
38390995 |
T |
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