View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1479_low_3 (Length: 399)
Name: NF1479_low_3
Description: NF1479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1479_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 103 - 383
Target Start/End: Complemental strand, 31131916 - 31131636
Alignment:
| Q |
103 |
gtggcgagcccccttacttcagcgacagcttctttcaaccgtcgcttggttccaatgtttaggaattttttcactttccataaaaatggaacagcagcgt |
202 |
Q |
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| T |
31131916 |
gtggcgagcccccttacttcagcgacagcttctttcaaccgtcgctcgggtccaatgtttaggaattttttcactttccataaaaatggaacatcagcgt |
31131817 |
T |
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| Q |
203 |
ttatcctgtcgccgctgattcgtgtgctatcgtcaaaagctttcacaaacgcgatttcgggaagagaagggaggagatactccgggtcgaatccaaatgc |
302 |
Q |
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| T |
31131816 |
ttatcctgtcgccgctgattcgtgtgctatcgtcaaaagctttgacaaacgcgatttcgggaagagaagggatgagatattccggatcgaatccaaatgt |
31131717 |
T |
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| Q |
303 |
aattatgcaaatattatcaaacgtaaaacgttggagaatatcttgaaaatcagggagaatcatttggtttttggaggcttc |
383 |
Q |
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| T |
31131716 |
gattatgcaaatattatcaaacgtaaaacgttggagaatatcttgaaaatcagggaggatcatttagtttttggaggcttc |
31131636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 103 - 362
Target Start/End: Complemental strand, 31127208 - 31126949
Alignment:
| Q |
103 |
gtggcgagcccccttacttcagcgacagcttctttcaaccgtcgcttggttccaatgtttaggaattttttcactttccataaaaatggaacagcagcgt |
202 |
Q |
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| T |
31127208 |
gtggcgagtcctcttacttcagcagcagcttcttttaaccgtcgctctgatccaacatttaatattttcttcactttccatagaaatggaatcgctgcat |
31127109 |
T |
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| Q |
203 |
ttatcctgtcgccgctgattcgtgtgctatcgtcaaaagctttcacaaacgcgatttcgggaagagaagggaggagatactccgggtcgaatccaaatgc |
302 |
Q |
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| T |
31127108 |
ttaacctctcactgctgattcgtgagctatcatcaaaggctttaacaaacgctgtttcgggaagagaagggaggagatactccggatcaaatccaaacgc |
31127009 |
T |
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| Q |
303 |
aattatgcaaatattatcaaacgtaaaacgttggagaatatcttgaaaatcagggagaat |
362 |
Q |
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| T |
31127008 |
aattatgcaaatattatcaaacgtgaaacgttggagaatatcttgaaaattagcgagaat |
31126949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 115 - 383
Target Start/End: Complemental strand, 31077878 - 31077610
Alignment:
| Q |
115 |
cttacttcagcgacagcttctttcaaccgtcgcttggttccaatgtttaggaattttttcactttccataaaaatggaacagcagcgtttatcctgtcgc |
214 |
Q |
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| T |
31077878 |
cttacttcagcgacggcttctttcaatcgtcgctcgatccctatgtttaatattttcttcactttccatatcaatggaatcgcagcgttaaatctcacac |
31077779 |
T |
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| Q |
215 |
cgctgattcgtgtgctatcgtcaaaagctttcacaaacgcgatttcgggaagagaagggaggagatactccgggtcgaatccaaatgcaattatgcaaat |
314 |
Q |
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| T |
31077778 |
tgctaattagtgagctatcgtcaaaggcttttacaaacatggttttgggaagagaagaatgtaagtactccggatcgaatccaaacgcgattctgcagat |
31077679 |
T |
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| Q |
315 |
attatcaaacgtaaaacgttggagaatatcttgaaaatcagggagaatcatttggtttttggaggcttc |
383 |
Q |
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| T |
31077678 |
actatcgaacgtaaaacgttggaggatatcttgaaaatcaagcagaaccgtttggtttttggaagcttc |
31077610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 31132000 - 31131961
Alignment:
| Q |
19 |
gaacttaaaaatcgcgacaaaagatccaccgattccaagg |
58 |
Q |
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| T |
31132000 |
gaacttaaaaatcgcgacaaaatatccaccgattccaagg |
31131961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 223
Target Start/End: Complemental strand, 31128888 - 31128768
Alignment:
| Q |
103 |
gtggcgagcccccttacttcagcgacagcttctttcaaccgtcgcttggttccaatgtttaggaattttttcactttccataaaaatggaacagcagcgt |
202 |
Q |
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|||||||| || ||||||||| |||| |||||||| | |||| ||||| ||||| |||| | ||| ||||||||||||| |||||||| ||| | | |
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| T |
31128888 |
gtggcgagtcctcttacttcaacgacggcttcttttagccgtttcttggatccaacatttaatattttcttcactttccatagaaatggaatggcatcat |
31128789 |
T |
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| Q |
203 |
ttatcctgtcgccgctgattc |
223 |
Q |
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| T |
31128788 |
ttaacctctcgctgctgattc |
31128768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 354
Target Start/End: Complemental strand, 38655148 - 38655083
Alignment:
| Q |
289 |
tcgaatccaaatgcaattatgcaaatattatcaaacgtaaaacgttggagaatatcttgaaaatca |
354 |
Q |
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| T |
38655148 |
tcgaaaccaaacgcgattttgcagatattgtcaaacgtgaaacgttggagaatgtcttggaaatca |
38655083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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