View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1479_low_30 (Length: 232)
Name: NF1479_low_30
Description: NF1479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1479_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 8e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 38389777 - 38390002
Alignment:
| Q |
1 |
agtttgaagatatagtaaaaccacatgagtaatggatttgcatgaattattagtagttacttaaattgaaaaaccacattgttcagacctacatgacaaa |
100 |
Q |
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| T |
38389777 |
agttagaagatatagtaaaaccacatgagcaatggatttttatgaattattagtagttacttaaattgaaaaaccacattgttcagacctacatgacaaa |
38389876 |
T |
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| Q |
101 |
gttacaagatatagtaaaatgaattgcgc-------atatgtattctcttgatacgcatcttttgatcgattccgtatttattggttgccaaggcagctg |
193 |
Q |
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| T |
38389877 |
gttagaagatatagtaaaatgaattgcgcttcatgagtatgtattctcttgatacgtatcttttgatcgattccatatttattggttgccaaggcagctg |
38389976 |
T |
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| Q |
194 |
gctggttttagatttttcttactagc |
219 |
Q |
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| T |
38389977 |
ggtggttttagatttttcttactagc |
38390002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 22 - 126
Target Start/End: Complemental strand, 38391275 - 38391171
Alignment:
| Q |
22 |
cacatgagtaatggatttgcatgaattattagtagttacttaaattgaaaaaccacattgttcagacctacatgacaaagttacaagatatagtaaaatg |
121 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||| |||||||||||||||| |
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| T |
38391275 |
cacatgagtaatggatttgtatgaattattagtagttacttaaattgaaaaactacattattcaaacctacatgacaaagtttgaagatatagtaaaatg |
38391176 |
T |
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| Q |
122 |
aattg |
126 |
Q |
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| T |
38391175 |
aattg |
38391171 |
T |
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