View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1479_low_31 (Length: 228)
Name: NF1479_low_31
Description: NF1479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1479_low_31 |
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| [»] scaffold2086 (1 HSPs) |
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| [»] scaffold1996 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 35776767 - 35776556
Alignment:
| Q |
1 |
ccaaaattacaaaactgtgatacttaagagaccgaaagtacactcaaattaatcttctaatgtaaaatgtcttcaactaaaagattttaaattattttca |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35776767 |
ccaaaattacaaaactatgatacttaagagaccgaaagtacactcaaattaatcttctaatgtaaaatgtcttcaactaaaagattttaaattatcttca |
35776668 |
T |
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| Q |
101 |
gtgacaattatcttgagnnnnnnnnnnnnnnnnnntatttattaaatatttataaacttataacgaacaaattatagaatttgcttgcagcaatattgcg |
200 |
Q |
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|||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
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| T |
35776667 |
gtgacaattatcttca----ttttttttttttaaatatttattaaatatttataaacttataacaaacaaattatagaatttgcttgcagcaatattgag |
35776572 |
T |
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| Q |
201 |
ataagtttcactatat |
216 |
Q |
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||||| |||||||||| |
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| T |
35776571 |
ataaggttcactatat |
35776556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2086 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold2086
Description:
Target: scaffold2086; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 931 - 1023
Alignment:
| Q |
1 |
ccaaaattacaaaactgtgatacttaagagaccgaaagtacactcaaattaatcttctaatgtaaaatgtcttcaactaaaagattttaaatta |
94 |
Q |
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||||||||||| || | ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||| |
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| T |
931 |
ccaaaattacacaaatatgatacttaagaggccgaaagtacactcaaattaatcttc-aatgtaaaatgtcttccactaaaatattttaaatta |
1023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold1996
Description:
Target: scaffold1996; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 931 - 1023
Alignment:
| Q |
1 |
ccaaaattacaaaactgtgatacttaagagaccgaaagtacactcaaattaatcttctaatgtaaaatgtcttcaactaaaagattttaaatta |
94 |
Q |
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||||||||||| || | ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||| |
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| T |
931 |
ccaaaattacacaaatatgatacttaagaggccgaaagtacactcaaattaatcttc-aatgtaaaatgtcttccactaaaatattttaaatta |
1023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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