View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1479_low_4 (Length: 378)
Name: NF1479_low_4
Description: NF1479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1479_low_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 378
Target Start/End: Original strand, 1559103 - 1559463
Alignment:
| Q |
18 |
gtaatcgccgccgctgcaaaagccgcttccgtacacggtgccgtttattccgctatcaatcatgttgctgttactgccgttgctattgcttccggtgctt |
117 |
Q |
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| T |
1559103 |
gtaatcgccgccgctgcaaaagccgcttccgtacacggtgccgtttattccgctatcaatcatgttgctgttactgccgttgctattgcttccggtgctt |
1559202 |
T |
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| Q |
118 |
gtctttctactaaggttgatttcttgtggccgaaaccggatgagcaaccaggtcctcttctgactcttccttttctgagaagttgcttcgctgattatga |
217 |
Q |
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| T |
1559203 |
gtctttctactaaggttgatttcttgtggccgaaaccggatgagcaaccaggtcctcttctgactcttccttttctgagaagttgcttcgctgattatga |
1559302 |
T |
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| Q |
218 |
ttttgcttacgatttgtgattccgaaggaaatagtcgcttatgatagtttttacttcaacgttttgatttatgtcattgattgactttgtaggacgttca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1559303 |
ttttgcttacgatttgtgattccgaaggaaatagtcgcttatgatagtttttacttcaacgttttgatttatgtcattgattgactttgtaggacgttca |
1559402 |
T |
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| Q |
318 |
caactatgtcactgagattatgaataattcatcaagttcgtcgactctgtcaaattttact |
378 |
Q |
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| T |
1559403 |
caactatgtccctgagattatgaataattcatcaagttcgccgactctgtcaaattttact |
1559463 |
T |
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