View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1479_low_9 (Length: 328)

Name: NF1479_low_9

Description: NF1479

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF1479_low_9

[»] chr4 (1 HSPs)

[»] chr2 (1 HSPs)

Target: chr4 (Bit Score: 106; Significance: 5e-53; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 106; E-Value: 5e-53

Query Start/End: Original strand, 184 - 321

Target Start/End: Complemental strand, 21055812 - 21055672

Alignment:

Q	184	atgaggtaagaagtgaagaaatagagagaaagagaaagccaaagaatccatttgtaatatttatgaaaatggnnnnnnnc---ttgttgaggtctaatac	280	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	21055812	atgaggtaagaagtgaagaaatagagagaaagagaaagccaaagaatccatttgtaatatttatgaaaatggtttttttcttgttgttgaggtctaatac	21055713	T

Q	281	catgtttatgcatgagtttcattttaacatagtatcctttg	321	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	21055712	catgtttatgcatgagtttcattttaacatagtatcctttg	21055672	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 42; E-Value: 0.000000000000008

Query Start/End: Original strand, 182 - 243

Target Start/End: Original strand, 35417443 - 35417504

Alignment:

Q	182	tgatgaggtaagaagtgaagaaatagagagaaagagaaagccaaagaatccatttgtaatat	243	Q
		\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|
T	35417443	tgatgagataagaggtgaagaaataaagagaaagagaaaaccaaagaagccatttgtaatat	35417504	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]