View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14800_high_10 (Length: 289)
Name: NF14800_high_10
Description: NF14800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14800_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 4642223 - 4642504
Alignment:
| Q |
1 |
ttagtaagtacacaaccgagcctaagttggctgctcttataagaagatccatccatgttgagggtgtttactagtaaccaaaatgtacttcctagaagtt |
100 |
Q |
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||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4642223 |
ttagtaagtacacaaccgagcctaagttgtctgctctcataagaagatccatccatgttgagggtgtttactagtaaccaaaatgtacttcctagaagtt |
4642322 |
T |
|
| Q |
101 |
gaaggaaagccaatattccttcaaatccaattttaactgtcact--tatattcagtattagaattagtgatacttgtaaattcctctttcttttaattta |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4642323 |
gaaggaaagccaatattccttcaaatccaattttaactgtcacttatatattcagtattagaattagtgatacttgtaaattcctctttcttttaattta |
4642422 |
T |
|
| Q |
199 |
tatgctgttaactttctaaccatgatacttgcaatttttcttgtagtgacttcgaatagtcagtgcataaacacaatgatga |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4642423 |
tatgctgttaactttctaaccatgatacttgcaatttttcttgtagtgacgtcgaatagtcagtgcataaacacaatgatga |
4642504 |
T |
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